LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi07g2097	ATGGGGAAAGGAAGAGCACCTTGTTGTGATAAAACTAAAGTGAAGAGAGGACCATGGAGTCCTGAAGAAGATCTTAAGCTCATTACTTTCATCCACAAACATGGCCATGATAATTGGAGAGCTCTTCCTAAACTTGCAGGATTGGTAAGATGTGGGAAAAGCTGTCGTTTGAGATGGATCAACTACTTGAGGCCTGATGTGAAGCGTGGCAATTTTTCTAAGGAAGAAGAGGACACCATCGTAAGGCTTCACCATGCCTTAGGAAACAAATGGTCAAAGATTGCGTCTCAATTGCCAGGAAGGACAGACAATGAGATCAAGAACGTTTGGAACACACATCTTAAGAAAAGATTAAAGCCTAAGCCCTCAAAATCCATTACTCTGTCCTCTGATTCATCCTCTTCCTCTGAAAAAATGGATCAAGACCCTTCAGAGAAACAAGTTCCCAACGAAGCTATCATCAATGGCGTAGTTACTGAGGACCCAAAAGAGTCACCACCTACTTCATTCTCTTCTTCTGATAATTCATCATCATCAAAACCAGAAGAAGAAGATGAACAGATTTTAGAGTCTTTGCTTAAGGAGGATGAAGATCCTCTGCTCCAAATTCCAGTGGATGACCCAATGGACTTTGACATATGGAGCATTCTGGAGAATCCAGAATCCTTCCAATCAAATAATGATTTTATGGCTCCAGATGCTTCTGAAGATGATGCAGACAAGAATAAATGGTTTCGTGAATTAGAGAATGAACTTGGATTGGGAACATCTGAGGGATTCAACCAAGGAAGCAGGAATTTTGATGACCATGATGATGCTGACATGAATTTTCTGGAATCATCATGGTGCTCTTGGCCTGAAATTTACAATCTTTAA	876	0.4075	MGKGRAPCCDKTKVKRGPWSPEEDLKLITFIHKHGHDNWRALPKLAGLVRCGKSCRLRWINYLRPDVKRGNFSKEEEDTIVRLHHALGNKWSKIASQLPGRTDNEIKNVWNTHLKKRLKPKPSKSITLSSDSSSSSEKMDQDPSEKQVPNEAIINGVVTEDPKESPPTSFSSSDNSSSSKPEEEDEQILESLLKEDEDPLLQIPVDDPMDFDIWSILENPESFQSNNDFMAPDASEDDADKNKWFRELENELGLGTSEGFNQGSRNFDDHDDADMNFLESSWCSWPEIYNL	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi07g2097	291	ProSiteProfiles	Myb-like domain profile.	11	63	IPR001005	-
	Mibi07g2097	291	Pfam	Myb-like DNA-binding domain	16	63	IPR001005	-
	Mibi07g2097	291	Pfam	Myb-like DNA-binding domain	69	114	IPR001005	-
	Mibi07g2097	291	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	64	118	IPR017930	-
	Mibi07g2097	291	SMART	sant	15	65	IPR001005	-
	Mibi07g2097	291	SMART	sant	68	116	IPR001005	-
	Mibi07g2097	291	Gene3D	-	71	147	-	-
	Mibi07g2097	291	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	11	63	IPR017930	-
	Mibi07g2097	291	ProSiteProfiles	Myb-like domain profile.	64	114	IPR001005	-
	Mibi07g2097	291	FunFam	MYB transcription factor	70	147	-	-
	Mibi07g2097	291	CDD	SANT	18	63	IPR001005	-
	Mibi07g2097	291	MobiDBLite	consensus disorder prediction	162	177	-	-
	Mibi07g2097	291	CDD	SANT	71	114	IPR001005	-
	Mibi07g2097	291	Gene3D	-	15	68	-	-
	Mibi07g2097	291	MobiDBLite	consensus disorder prediction	123	137	-	-
	Mibi07g2097	291	FunFam	Transcription factor RAX3	9	69	-	-
	Mibi07g2097	291	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	4	221	-	-
	Mibi07g2097	291	MobiDBLite	consensus disorder prediction	113	188	-	-
	Mibi07g2097	291	SUPERFAMILY	Homeodomain-like	14	110	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi07g2097	Mibi-ChrMibi07	44611792	44614684	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi07g2097	1	182	MYB Transcription Factor Family	AT1G56160	64.835	2.51e-76	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi07g2097		Myb_DNA-binding	4.2e-15	CL0123