Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g2083 ATGGATGAGGGAAAGCGTAAATCCAGGAAGGAAGATGGGAAGGAAGAGGATTCCAAGAGGAGTCGCCGTGAACGAGACCGTGAGAAGACTAGTGAGAAAGGTAAGGATAGAAGTGAAGGGAGGCATAGGGATAGGGAGAAGAAGGATCGTGAGAACAGACGCTATGAGAGAGAGAAAAGCAGTGATTCTGATGAAAGATTTGATAGAGAGAGAGAGAAGCATAGAGAAAAGGATAAGGATAGGACGCGAGTTCATGATGAAGAAAGAGAAAGAGCTCGAGATAAGAAAAGGGAAAGAGATAGGGAAGATAGGGAAAGGGAGAGGAGAGATAGAAGGGAGAAAGAACGGGATAAGGATAGAGAAAGGGAACGGGATAGGAGAGAGCGTGAAAGGGAGAGGGAAGTTGAAAAAGAAAGGGGGAAGGGAGGTAGAGACCGGGAAAAGCGTAGGGAAGTTGATAGTGAGCATAGTGATGATGATTCCAAGGATAGAGAAAGAAAACGGCACAAGAAAGATGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTCAGTAAATCAAGTAGGCAAACTGAGAATAATGAGGAGAGCCCAAAGAAAAAGAGCAGCTATGATAACTTAGATGCCAACGAAAGCAAACCAAGCCGTGAGGAGGAGTTAGAGGATGAACATAGGAGACTGGATGAAGAAATGGAAAAGAGGAGAAGAAGAGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAGAGAAGAAGCTGAGATAGAAAACCGTGGTGAAGCAAGTGTTGATGAACCCAAGTTTGGAAAGGCCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACCACTACAGGGAAGCCAAATACAGCTATGGATATTGACGAAGATGACAAACCTTTGGATAAAGAACCTAAGGATTCACATGGTAATAATGGACATGATACATCTAATTTACCAGATGAAGCTAATGGTTCTAATGTAGATGAGGAAATTGATCCATTGGATGCTTTCATGAATTCTATGGTTTTGCCTGAAGTTGAAAAGTTGAATAGTGCTGTGGCTTCTGAATCTTCTAATCAAATTTCTGACTCAAAGTTCAAGGATAACAAGGATGAGCAAATTAATGGTGGGATTCCTAGGAAAGGTTCAAATAAATCAATTGGGAGAATAATTCCTGGTGAAGAGTCTGAGTCAGATTATGAAGACCTTGAAGTTGAGGGTGATCCAGTGGACGAAGATGATGATGAATTCATGAAAAGAGTAAAGAAGACCAAAGCTGAGAAACTTTCCATTGTTGACCACTCTAAGATTGATTATAAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGATGACTCCTGAAGAAGTTGCAGCATACAGGAAGGAATTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGAATCAGATTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCAATGACTATTCAAGCTCAGGCCCTCCCTGTGATTATGAGTGGTAGAGATTGCATCGGAATTGCTAAAACTGGCTCAGGAAAAACCCTTGCTTTTGTTCTTCCGATGTTGAGGCATATCAAGGATCAGCCGCCAGTTGTTGCGGGAGATGGACCCATTGGGCTTATAATGGCCCCTACAAGGGAACTTGTTCAGCAAATTCACAGTGATATAAGGAAGTTTGCAAAAGTACTTGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAATCAGTGAATTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGCGGCGGAAAGATAACTAACCTGCGTAGAGTTACCTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGTATTGTTCAGAATATTCGACCAGATCGTCAAACTGTTCTGTTTTCTGCTACTTTTCCCCGTCAGGTCGAAATTCTGGCCCGTAAGATTTTGAACAAGCCTGTTGAAATACAGGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTGGTAGAGGTGAGACCAGAAAATGAGAGGTTCTTCAGGCTCCTAGAATTACTTGGGGAATGGTATGAGAAGGGAAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATTTGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAAACAGATCGGGAATCCACAATTTCTGACTTCAAAAGCAATGTCTGTAATTTGTTAGTTGCAACTAGTGTTGCTGCCAGGGGTTTAGATGTCAAGGAGCTTGAATTGGTTGTCAATTTTGATGTTCCAAATCACTATGAAGATTATGTACATCGTGTTGGACGCACAGGACGAGCTGGTCGGAAGGGTTGTGCCATCACATTTATTTCAGAGGAAGAAGCACGATATGCGCCTGATCTGGTGAAAGCTTTGGAGCTCTCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGGTTTATGGCGAAAGTTAATCAAGGACTTGAGCAAGCCCATGGAACTGGATATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCTGATTCTGAGGATGAAGATGATGGTATTAGGAAGGCAGGAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAGCAAACACCCCTGCAATGCCCTCTAATTCCCAGGTAATTTCAAATGGTGGACTGCCTGTTTCTTTGCCTGCTGTTCTTGGTCTTCAGACTGCAGGAGTCATGCCTGGGACAGGGCTGCCCATGGTTCCAAGTGACGGAGCAACTCGGGCAGCATTAGCTGCTATGAACCTGCAGAATAAATTAGCCAAGATTGCTGGTGCAATGCCTGAGCATTATGAAGCTGAGTTGGAGATAAATGATTTCCCCCAAAATGCTCGGTGGAAAGTCACACACAAGGAAACTCTAGGCCCAGTTTCAGAGTGGACTGGAGCTGCTATTACCACCAGGGGGCAGTATTTCCCACCTGGCAAGATCCCAGGACCTGGTGAACGGAAACTCTATTTGTTCATTGAGGGCCCCAGCGAGCAGTCTGTCAAGAGAGCAAAAGCAGAATTGAAGCGTGTTCTGGAAGACATCACAAATCAGGCTTTGCAACTTCCTGGCGGTGCTCAACCAGGAAAATACTCTGTTGTATAA 3357 0.4364 MDEGKRKSRKEDGKEEDSKRSRRERDREKTSEKGKDRSEGRHRDREKKDRENRRYEREKSSDSDERFDREREKHREKDKDRTRVHDEERERARDKKRERDREDRERERRDRREKERDKDRERERDRREREREREVEKERGKGGRDREKRREVDSEHSDDDSKDRERKRHKKDDDDYKGREQEKSVSKSSRQTENNEESPKKKSSYDNLDANESKPSREEELEDEHRRLDEEMEKRRRRVQEWQELRRKREEAEIENRGEASVDEPKFGKAWTLEGESDDEEGTTTGKPNTAMDIDEDDKPLDKEPKDSHGNNGHDTSNLPDEANGSNVDEEIDPLDAFMNSMVLPEVEKLNSAVASESSNQISDSKFKDNKDEQINGGIPRKGSNKSIGRIIPGEESESDYEDLEVEGDPVDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEVKEIAKMTPEEVAAYRKELELKIHGKDVPKPVKSWNQIGLTSKILETIKKLNYEKPMTIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIRKFAKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKILNKPVEIQVGGRSVVNKDITQLVEVRPENERFFRLLELLGEWYEKGKILIFVHSQEKCDALFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVVNFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKALELSEQIVPDDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQILVAATKANTPAMPSNSQVISNGGLPVSLPAVLGLQTAGVMPGTGLPMVPSDGATRAALAAMNLQNKLAKIAGAMPEHYEAELEINDFPQNARWKVTHKETLGPVSEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGAQPGKYSVV 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g2083 1118 Coils Coil 85 124 - -
Mibi07g2083 1118 Gene3D - 692 867 IPR027417 -
Mibi07g2083 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 555 841 IPR027417 -
Mibi07g2083 1118 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 638 646 IPR000629 -
Mibi07g2083 1118 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 864 IPR001650 -
Mibi07g2083 1118 CDD SF2_C_DEAD 704 834 - -
Mibi07g2083 1118 Pfam Helicase conserved C-terminal domain 719 825 IPR001650 -
Mibi07g2083 1118 FunFam probable ATP-dependent RNA helicase DDX17 445 695 - -
Mibi07g2083 1118 Pfam DEAD/DEAH box helicase 508 679 IPR011545 GO:0003676|GO:0005524
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 398 413 - -
Mibi07g2083 1118 CDD DEADc_DDX46 472 693 - -
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 1 339 - -
Mibi07g2083 1118 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 483 511 IPR014014 GO:0003724
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 899 931 - -
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 291 311 - -
Mibi07g2083 1118 SMART ultradead3 502 707 IPR014001 -
Mibi07g2083 1118 Coils Coil 218 245 - -
Mibi07g2083 1118 Gene3D - 435 691 IPR027417 -
Mibi07g2083 1118 SMART helicmild6 744 825 IPR001650 -
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 1 283 - -
Mibi07g2083 1118 PANTHER RNA HELICASE 427 903 - -
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 352 413 - -
Mibi07g2083 1118 Coils Coil 1082 1105 - -
Mibi07g2083 1118 MobiDBLite consensus disorder prediction 899 913 - -
Mibi07g2083 1118 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 514 692 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g2083 Mibi-ChrMibi07 44258242 44261598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g2083 470 845 Eukaryotic Initiation Factors Gene Family AT3G19760 32.105 7.22e-58 204