Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g2056 ATGAAGCCCTCTACCAGCAACAGCAGAAGGTCTCTAAGACTTCGCAAGAAGGAAGAGGGAAGACAATCCAAAAAAACAAGAAGCAGTGCAACTCCACGAAAAAGAAGAAGAAGAAGCAAGGCAATAGGAGCTGAGAAGAACAATTCTGACCGGCCACAATCTCCGGTGGCTGGAAATATACTTGACTTATTGGAACGGAGAATAGGAGAAGATGGATATTACTACGAATGTCTTCTATGTGAAGATGGGGGCAGACTAATGTGTTGCGAAAACTGTCCCGGAACGTATCATCGGAAGTGCCTTGGCCTTCGGTCAATTCCAAAGGGCAAATGGCTGTGCCCTACTTGTAGTGATAAAGCAGCATCTGCTTCATCAAGGGAAAGTTGGCTGAAGAGTTTGGGTACCAAACAACCTTTATCCTTCAAGAAGAAGAAAGCTCCTGCCTCTACTTCTTCTCCACCTTCTTCAAAGAGCGATTAG 480 0.4521 MKPSTSNSRRSLRLRKKEEGRQSKKTRSSATPRKRRRRSKAIGAEKNNSDRPQSPVAGNILDLLERRIGEDGYYYECLLCEDGGRLMCCENCPGTYHRKCLGLRSIPKGKWLCPTCSDKAASASSRESWLKSLGTKQPLSFKKKKAPASTSSPPSSKSD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g2056 159 Pfam PHD-finger 77 118 IPR019787 -
Mibi07g2056 159 MobiDBLite consensus disorder prediction 11 26 - -
Mibi07g2056 159 MobiDBLite consensus disorder prediction 134 159 - -
Mibi07g2056 159 PANTHER PHD FINGER PROTEIN 15 153 - -
Mibi07g2056 159 ProSitePatterns Zinc finger PHD-type signature. 77 116 IPR019786 -
Mibi07g2056 159 MobiDBLite consensus disorder prediction 1 56 - -
Mibi07g2056 159 ProSiteProfiles Zinc finger PHD-type profile. 74 119 IPR019787 -
Mibi07g2056 159 SUPERFAMILY FYVE/PHD zinc finger 67 117 IPR011011 -
Mibi07g2056 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Mibi07g2056 159 SMART PHD_3 76 117 IPR001965 -
Mibi07g2056 159 MobiDBLite consensus disorder prediction 144 159 - -
Mibi07g2056 159 MobiDBLite consensus disorder prediction 27 41 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g2056 77 133 PHD Transcription Factor Family AT1G05380 42.623 1.21e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi07g2056 PHD 1.3e-07 CL0390