Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g2018 ATGCCAGTGTTGTTCTCTTCACGGTTGGTTCTGCTAGTTGGAGAGACATTGCCCTTGCGAAGGATCTTGCCCGCTTCTAGTGCTTATTGTTTACATAGCAGTGCCCGTTGTTTAAGTGATGTAGAGCCTCAACATGTTCCCCTCACTCCCTTAAGCATTGGTTTGAATAATGAAAATGAATCTAGGAAGAACGACAAAGTCAGTAGACTGAAGCAATTGGGTTCCTCCTCTTTAGCCTCAAAGAGCAGAGCAAAGACCATTGGTACTAATAAAATTAAAGCTGGTGGAACCGCAAAAAAGCAACAGATAGAATCTGCTCCGTTTGCTGCCAAGTCTTTTCCTGAGCTTGGCCTCCCTCATTTGTTGCTTGAGAGATTGGAAAATGAGGGTTTTACGGCTCCAACTGAAGTGCAGTCTGCAGCAATCCCTACAATTTTGGATAATCATGATGTCATAATTCAATCTTACACAGGATCAGGGAAAACATTGGCTTATCTTCTTCCTATACTATCTAATGTTGGCCCTTTGAGGAACAAAACTTCTGAAGGTAAGAATGATGGTGAAGCTGGGAAGAAAGTGGGAATCGAGGCAGTAGTTGTTGCTCCCTCTAGGGAGCTGGGTATGCAGATAGTGAGGGAGTTTGAGAAGATACTCGGACTTGCCAACAAAAAGGCGGTTCAACAGCTTGTGGGAGGCGCGAACAGATCGAGGCAAGAAGAAGCCCTCAAGAAAAATAAACCTGCCATTGTTGTTGGCACACCTGGTAGAATTGCAGAACTCAGTGCAGCTGGCAAACTTCACACCCATGGCTGTCGTTTTCTGGTCCTAGATGAAGTTGATGAGCTCTTATCGTTTAACTTCCGGGAGGACATGCACCGGATACTGGAACATGTGGGGAAAAGAGCAGGAGCCAACCCACGAGCACAAAATGGTAGTACAGTTCCTCGACGGGCTGAGCGTAAAACTATTATGGTGTCTGCAACTGTTCCATTTTCCGTTGTCAGGGCAGCCCGAAGCTGGGCACATGATCCACTTCTTGTCCAAGCCAATAAAGTTGGTCCACTTGAAACCATTTCTCCTCCCACGCCTGTCAATTTATCAGGATCTGGTCCGAACTCAAATTCTAACTCTACTACTACCCTTACACAGGCAGCAGAGAGCCTACCTCCTGCATTAAAGCATTATTATTGTGTCACAAAGTTACAGCATAAAGTTGATGCCTTGAGAAGGTGTATTCATGCACTAGATGCCAAATATGTTATAGCTTTCATGAACCATATTAAGCAACTTAAGGATGTTGTCTTCAAGCTAGAGGCACGAGGGGTGAAAGCTGCAGAGTTACATGGGGATCTTGGGAAACTTGCCAGGTCAACAACTTTGAAGAAGTTCAAGAATGGTGAGGTGAGAGTTCTTGTGACCAACGAATTATCAGCACGGGGATTGGATGTAGCAGAATGCGATCTTGTGGTTAATTTGGACTTGCCCACGGACTCAATTCACTATGCACACCGAGCCGGCAGGACGGGGCGGCTTGGGAGGTCTGGTACAGTGCTTTCATTATGTGAAGAGCCAGAAGTGTTTGTTATGAAGAAACTGCAAAAGCAGCTTGGGATACCTATAGCGTGTTGTGATTTTGTGGAGGGTAAGCTACTTGTTAAAGAAGAGGAGAAAATGCTGCATTCTGTGAGATGA 1692 0.4533 MPVLFSSRLVLLVGETLPLRRILPASSAYCLHSSARCLSDVEPQHVPLTPLSIGLNNENESRKNDKVSRLKQLGSSSLASKSRAKTIGTNKIKAGGTAKKQQIESAPFAAKSFPELGLPHLLLERLENEGFTAPTEVQSAAIPTILDNHDVIIQSYTGSGKTLAYLLPILSNVGPLRNKTSEGKNDGEAGKKVGIEAVVVAPSRELGMQIVREFEKILGLANKKAVQQLVGGANRSRQEEALKKNKPAIVVGTPGRIAELSAAGKLHTHGCRFLVLDEVDELLSFNFREDMHRILEHVGKRAGANPRAQNGSTVPRRAERKTIMVSATVPFSVVRAARSWAHDPLLVQANKVGPLETISPPTPVNLSGSGPNSNSNSTTTLTQAAESLPPALKHYYCVTKLQHKVDALRRCIHALDAKYVIAFMNHIKQLKDVVFKLEARGVKAAELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRSGTVLSLCEEPEVFVMKKLQKQLGIPIACCDFVEGKLLVKEEEKMLHSVR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g2018 563 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 407 551 IPR001650 -
Mibi07g2018 563 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 142 347 IPR014001 -
Mibi07g2018 563 MobiDBLite consensus disorder prediction 360 380 - -
Mibi07g2018 563 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 27 550 - -
Mibi07g2018 563 Pfam Helicase conserved C-terminal domain 406 512 IPR001650 -
Mibi07g2018 563 MobiDBLite consensus disorder prediction 359 380 - -
Mibi07g2018 563 MobiDBLite consensus disorder prediction 57 81 - -
Mibi07g2018 563 CDD DEADc 122 348 - -
Mibi07g2018 563 Pfam DEAD/DEAH box helicase 135 333 IPR011545 GO:0003676|GO:0005524
Mibi07g2018 563 CDD SF2_C_DEAD 392 521 - -
Mibi07g2018 563 Gene3D - 389 545 IPR027417 -
Mibi07g2018 563 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 111 139 IPR014014 GO:0003724
Mibi07g2018 563 SMART helicmild6 431 512 IPR001650 -
Mibi07g2018 563 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 532 IPR027417 -
Mibi07g2018 563 SMART ultradead3 130 358 IPR014001 -
Mibi07g2018 563 Gene3D - 76 350 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g2018 Mibi-ChrMibi07 42386067 42387758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g2018 111 542 Eukaryotic Initiation Factors Gene Family AT3G13920 26.424 5.13e-40 149