Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g2017 ATGGCTGCCACCACAACAACAACCACCGCCGCCGCCGCCGCTCCTCCGCGTCAGTTCTCTCAGAAGGAGGAAGATATACAGTTGATGTTGGCCGCCGAAGTCCACCTCGGAACCAAAAACTGCAACTTTCAAATGGAGCGATATGTTTTCAAGCGCCGAAACGATGGTATCTACATCATTAATCTTGGAAAAACCTGGGAGAAGTTGCAGCTAGCCGCGAGGGTCATTGTTTCAATCGAGAACCCTCAGGACATTATTGTCCAGTCTGCTAGGCCTTATGGTCAAAGGGCTGTCCTCAAGTTTGCTCAGTACACTGGTGCCCATGCACTTGCTGGGAGACACACCCCAGGAACCTTCACTAATCAGCTGCAGACATCATACAGCGAGCCCCGCCTGTTAATTCTGACTGATCCAAGAACGGACCATCAGCCCATCAAGGAAGCAGCTCTTGGAAACATACCCACTATTGCTTTTTGCGACACTGATTCTCCTATGCGATATGTTGATATTGGGATTCCTGCCAACAACAAGGGGAAACACAGCATTGGCTGTCTTTTTTGGCTTTTGGCAAGAATGGTACTGCAGATGAGGGGTACTATTCGTCCAGGGCTCCCGTGGGATGTGATGGTGGATTTGTTCTTCTACAGAGAGCCTGAGGAGACCAAACAACTCGAGGAAGAGGAGGCGGCTCCAGTCCAAGATTATTCTGCTGCTGATTTTGGTGCTGGCATTGGTACCATTGCTGATGGCCAGTGGCCTGTTGCTGCTGACCAATCATGGACTGATCCCGTGCAACAGCCTATTTCGGCAGTTCCTGGTGTCGGCTGGACCCCAGATGCTGCTGCAGGTGATTGGGGTGATGTTGTCCCAGCTCCAGCTCCAGCTCCAGCTCCAGCTCCACAAGTTGCACAAGTTCCGGGAACTGGAATTGATAACATTCCTGCTACTGGCTGGGATTAA 960 0.5135 MAATTTTTTAAAAAPPRQFSQKEEDIQLMLAAEVHLGTKNCNFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVSIENPQDIIVQSARPYGQRAVLKFAQYTGAHALAGRHTPGTFTNQLQTSYSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLPWDVMVDLFFYREPEETKQLEEEEAAPVQDYSAADFGAGIGTIADGQWPVAADQSWTDPVQQPISAVPGVGWTPDAAAGDWGDVVPAPAPAPAPAPQVAQVPGTGIDNIPATGWD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g2017 319 SUPERFAMILY Ribosomal protein S2 21 211 IPR023591 -
Mibi07g2017 319 FunFam 40S ribosomal protein SA 25 231 - -
Mibi07g2017 319 CDD RPS2 29 195 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 Hamap 40S ribosomal protein SA [rps-0]. 13 263 IPR027498 GO:0003735|GO:0006412|GO:0015935
Mibi07g2017 319 Gene3D - 25 231 - -
Mibi07g2017 319 TIGRFAM uS2_euk_arch: ribosomal protein uS2 22 217 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mibi07g2017 319 MobiDBLite consensus disorder prediction 279 319 - -
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 56 65 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 168 182 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 130 147 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 26 44 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 105 122 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PRINTS Ribosomal protein S2 signature 147 158 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 ProSitePatterns Ribosomal protein S2 signature 1. 26 37 IPR018130 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 PANTHER 40S RIBOSOMAL PROTEIN SA 16 295 IPR005707 GO:0003735|GO:0006412|GO:0015935
Mibi07g2017 319 Pfam Ribosomal protein S2 29 124 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 Pfam Ribosomal protein S2 127 193 IPR001865 GO:0003735|GO:0005840|GO:0006412
Mibi07g2017 319 ProSitePatterns Ribosomal protein S2 signature 2. 130 154 IPR018130 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g2017 Mibi-ChrMibi07 42378828 42381271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g2017 13 291 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.377 8.55e-151 422