Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g2007 ATGGCAAATCACCTCTATCCTCCTCTCTATGCCTATAGCCCTACCTACGGAGTATCAGCCTCTTCACCGTCTTCCTCCGCCGCAACAACTTCCCTTTCCTCAAGTCGATACCTTTCTTCCGATATGTATTTCCCTCAACAACTCAAAGATTCCATCCTTCGCTATTCCTCTTATGCTTCCTCCGATGCCGACATTGCCCCTCCTGGTGTCTCCACCACTTCTTCTTCGCTATCTCAAGCTTCTTGGCCTGCTGCTGCTGCTGCCATTGCTGCTGCCGCTAATGTTGGTTCCGCTTCTGCATTGGACTCCTTTGTTAACCTTAAACGCTCTTCTGATGCACTCTACCATCCAACTGTTTTGCAAACCCATAACACGATTGGGCAAAGTCAAGCTTGGTATTCTACAAATTCGTTAACAAAGCGTCCTAGATACGAGAGTACGAGCCATTTGCCTACATACCCACAGAGGCCGGGAGAGAAGGATTGTGCACACTATATGCTCACAAGAACCTGTAAATTTGGAGATGCCTGCATATTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAAATGTTGCTACAAGTGAGACTCTTCCTGAGAGACCTGGAGAACCAGATTGTCCATACTTTGTTAAAACTAAGAGATGCAAGTTTGGCTCAAGGTGCAGGTTTAATCATCCCATGCATTTGTTTGAAAATGCTGATGTTTCTACCTTACCTGAGAGGCCTTCAGAGCCCCCATGCGCGTTCTACATGAAAACTGGACAATGCAAGTTTGGTATTACCTGTAAATTTCACCACCCAAAAGACATACAGATTCAGCTATCTCAAGAACAGAATGGTGCTTTTGAGCAGACCCACTTGACCTCTTATATAAAGGGGGCTTCTGGAGATACACAATTGTCTAATCTTTTTAGTTCGTACACTGCTCCTGTATTGCATAATAGCAAAGGGCTTCCTGTAAGACTGGGTGAAGTAGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAATATGGTGCTACGTGCCGCTACAATCATCCTGATAGGAATGTAATTAATCCAACTGCTGCTGGGTTTGGCCATACTGTTTTGACATCATCGGCTGCTAATCTTAATTTTGGAATACTAAATCCAGCTGCATCAATTTATCAAGCTATTGACCCCAGATTGTCAAGTGTAACGTCTCAGGTGGGAATAGCACCAACTGTCTATCCTCAACGACCAGGACAGATTGAGTGTGATTTCTATATGAAGACTGGAGAGTGCAAATTTGGAGAAAGATGCAAGTTCCATCACCCAATTGACCGGTCAGCACCATCACAGTCAGATTCAGCCGCACAACAAGCTGTTAAACTCACTCTTGCTGGATTACCAAGGAGAGAGGGATCTGTAATCTGTCCATATTATTTGAAAACTGGTACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCTCCTCCTGGAGAAGTTATGGAGATTGCAAAATCACAAGGGGCTGATGAAGGAGAAGAGGAAGCCCCAAGTCATTGA 1557 0.4489 MANHLYPPLYAYSPTYGVSASSPSSSAATTSLSSSRYLSSDMYFPQQLKDSILRYSSYASSDADIAPPGVSTTSSSLSQASWPAAAAAIAAAANVGSASALDSFVNLKRSSDALYHPTVLQTHNTIGQSQAWYSTNSLTKRPRYESTSHLPTYPQRPGEKDCAHYMLTRTCKFGDACIFDHPIWVPEGGIPDWKEVPNVATSETLPERPGEPDCPYFVKTKRCKFGSRCRFNHPMHLFENADVSTLPERPSEPPCAFYMKTGQCKFGITCKFHHPKDIQIQLSQEQNGAFEQTHLTSYIKGASGDTQLSNLFSSYTAPVLHNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNVINPTAAGFGHTVLTSSAANLNFGILNPAASIYQAIDPRLSSVTSQVGIAPTVYPQRPGQIECDFYMKTGECKFGERCKFHHPIDRSAPSQSDSAAQQAVKLTLAGLPRREGSVICPYYLKTGTCKFGATCKFDHPPPGEVMEIAKSQGADEGEEEAPSH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 156 184 IPR000571 GO:0046872
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 415 443 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 415 442 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 329 356 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 249 276 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 208 235 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 156 183 IPR000571 GO:0046872
Mibi07g2007 518 SMART c3hfinal6 468 495 IPR000571 GO:0046872
Mibi07g2007 518 FunFam zinc finger CCCH domain-containing protein 37 413 509 - -
Mibi07g2007 518 SUPERFAMILY CCCH zinc finger 333 357 IPR036855 GO:0046872
Mibi07g2007 518 SUPERFAMILY CCCH zinc finger 213 236 IPR036855 GO:0046872
Mibi07g2007 518 SUPERFAMILY CCCH zinc finger 471 495 IPR036855 GO:0046872
Mibi07g2007 518 SUPERFAMILY CCCH zinc finger 252 277 IPR036855 GO:0046872
Mibi07g2007 518 Gene3D - 413 508 - -
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 468 496 IPR000571 GO:0046872
Mibi07g2007 518 FunFam Zinc finger CCCH domain-containing protein 37 315 362 - -
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 329 357 IPR000571 GO:0046872
Mibi07g2007 518 SUPERFAMILY CCCH zinc finger 417 443 IPR036855 GO:0046872
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 249 277 IPR000571 GO:0046872
Mibi07g2007 518 PANTHER PROTEIN PHOSPHATASE RELATED 316 374 - -
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 158 182 IPR000571 GO:0046872
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 418 441 IPR000571 GO:0046872
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 355 IPR000571 GO:0046872
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 471 495 IPR000571 GO:0046872
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 235 IPR000571 GO:0046872
Mibi07g2007 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 252 276 IPR000571 GO:0046872
Mibi07g2007 518 FunFam Zinc finger CCCH domain-containing protein 37 112 193 - -
Mibi07g2007 518 Gene3D - 313 363 - -
Mibi07g2007 518 Gene3D - 115 193 - -
Mibi07g2007 518 Gene3D - 242 287 - -
Mibi07g2007 518 Gene3D - 194 241 - -
Mibi07g2007 518 ProSiteProfiles Zinc finger C3H1-type profile. 208 236 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g2007 Mibi-ChrMibi07 42295614 42304451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g2007 326 497 C2H2 Transcription Factor Family AT5G18550 34.104 4.07e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi07g2007 zf-CCCH 1.3e-10 CL0537