Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1965 ATGGGCTTCTTTTCTCACATATCTCCTCATTTTTCATTTTGTATATTTCCTTTAGTTATACACATCCTTTTTCTCTGTACACCATCATCAAATTCTCTAGACATCACCACAGATACAGAAGCTTTGATCTTGTTCAAGTCTCAGTTGAGTAATATTGATCCTTCTCACCCTTTATCTTCTTGGAATCACAGTTCATCATCCCCCTGCAATTGGTATGGTGTAACATGCAGCAGGCTTCGTCAAAGAGTTATAGGCTTAAATCTTTCAGGCCTAAGACTCTCTGGTCAGTTAAGTCCTAGTATAGGCAACCTCTCTTTTCTTCAGTCAATCCAGTTGCAGAAAAACCAATTCATAGGAGTGATTCCTGAGGAAATTGGCCGTCTAGTTCAGTTAAGAGCTCTAGACTTGAGTTCTAACAGAATAGAGGGCATTCTACCTTCAAATATTACGCGCTTGACCAAACTTGTCACACTTGACTTATCCGCAAACAATATAGCCAGCAAAATTCCTCAAGATATTGACAGCTTAACAGAGCTTCAAGTTGGAAGGTGTAATTCCAGAGAGCATTGGAAATCTCTCCAAGATATGACTGCGAAGGTGGGTGATTTTGGATTGGCTAGAGTGTTGATTGAAAGACCAACTAGTCAAGTCTCAATAAGCTCCACTCATGTTCTCAAAGGTTCAATCGGTTACATACCTCCAGAGTATGGATGGGGAGAAAAGCCATCAGCAGCAGGAGATACATACAGTTATGGCATTGTGTTGCTTGAGCTCTTTTCTGGGAGGAGCCCAACAGATGATAGCTTCACAGGGGGATCAAGCTTAACAAGATGGGTTCAATCAGCATTCCCTGACAAGACAGAGCAAGTTATAGACCCTCAGCTTCTGTCACACATTTTTCACAATGACCTTTTTGATGATAAAGGTCCAAATTTACAACTTGATTGTTTTAATGGAATTCTAGGAGTTGGGTTATCTTGCACGGCAGATTCTCCAGTTGGACGCCTTAAGATGAAAGATGCTGTTGCAAAATTAAAAGTTCTCAGAGATAATCTTTCCAAATTCAATCAAAACAAGGGCCCTTCTGAGCATTAG 1095 0.4046 MGFFSHISPHFSFCIFPLVIHILFLCTPSSNSLDITTDTEALILFKSQLSNIDPSHPLSSWNHSSSSPCNWYGVTCSRLRQRVIGLNLSGLRLSGQLSPSIGNLSFLQSIQLQKNQFIGVIPEEIGRLVQLRALDLSSNRIEGILPSNITRLTKLVTLDLSANNIASKIPQDIDSLTELQVGRCNSREHWKSLQDMTAKVGDFGLARVLIERPTSQVSISSTHVLKGSIGYIPPEYGWGEKPSAAGDTYSYGIVLLELFSGRSPTDDSFTGGSSLTRWVQSAFPDKTEQVIDPQLLSHIFHNDLFDDKGPNLQLDCFNGILGVGLSCTADSPVGRLKMKDAVAKLKVLRDNLSKFNQNKGPSEH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1965 364 PRINTS Leucine-rich repeat signature 152 165 - -
Mibi07g1965 364 PRINTS Leucine-rich repeat signature 131 144 - -
Mibi07g1965 364 SUPERFAMILY L domain-like 37 181 - -
Mibi07g1965 364 ProSiteProfiles Leucine-rich repeat profile. 130 153 IPR001611 GO:0005515
Mibi07g1965 364 SUPERFAMILY Protein kinase-like (PK-like) 195 351 IPR011009 -
Mibi07g1965 364 Gene3D Ribonuclease Inhibitor 35 196 IPR032675 -
Mibi07g1965 364 Coils Coil 338 358 - -
Mibi07g1965 364 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 195 351 - -
Mibi07g1965 364 Pfam Protein tyrosine and serine/threonine kinase 195 267 IPR001245 GO:0004672|GO:0006468
Mibi07g1965 364 FunFam Leucine-rich repeat receptor-like protein kinase 35 186 - -
Mibi07g1965 364 Gene3D Transferase(Phosphotransferase) domain 1 197 363 - -
Mibi07g1965 364 Pfam Leucine rich repeat N-terminal domain 37 77 IPR013210 -
Mibi07g1965 364 Pfam Leucine rich repeat 130 180 IPR001611 GO:0005515
Mibi07g1965 364 ProSiteProfiles Protein kinase domain profile. 1 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1965 Mibi-ChrMibi07 41079230 41082406 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1965 195 359 Receptor kinase-like Gene Family AT5G20480 37.126 1.11e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mibi07g1965 PK_Tyr_Ser-Thr 5.8e-08 CL0016