Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1956 ATGGAGCTTGGGTTGAGCTTAGGAGCTTCATCAAAGGCTTTCACTTTGATGGAAAAGCAGCCTTCTCCTTCAACTGAATTACAAATCAATGATCTTAACACAACCTTATCCATTGGTCCCATCTTCAGTAACAGCAACAATAAAACCTCTGAAGAAGAAGGAGATCAAGATCAAGAACAAGGAGAAGATGATGATGAAGCCAAGAAGCAAAATCAAAATATTAAATTCTCTTGTGCTAATTCTCTTTCCTCTTCTTCCTCACACCTTCATGATCTTCTTCCTCATCACTCCTCCAAACCTCTCCCTCTCTCCTCCTTCTCTTGGCCTCCTCCTTCTGATCACAACTGTGATGAAGTTGGAGGTAGTAATTCAGTGAGGGGTTTGAAGGTGAAGACGATGCAGGCGGAGGAGGAAGAGTACTCAGAGGAGAGGACAGTGCTGTCATCGTCTCCGATGAGCGGGGCGTCATCATTTCATCAGGTGGATCTGTGTATATATAGCAACAATAAAAGCAATAATAAAGCAGGGAATTATTACAGCAGTAATAATAGGAAGAGGAAGGTGATGACGATGATGAATGAGTCAGAAGGTGATGAAGGTAATTATAATTACTACGATCGTCAAAGGGGTGGTTGTTCATCAAGAGCAAGCGACGAAGAAGACAACAACAACATCGGTGTTCATGGTGGTGGTACTAGGAAGAAGCTCAGGCTATCTAAAGAACAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAACACACCACTCTTAATCCTAAACAAAAACTTGCTCTTGCCAAACAACTCAATCTTCGTCCTCGTCAAGTTGAAGTGTGGTTTCAAAACCGAAGAGCAAGGACGAAGCTGAAGCAGACAGAGGTGGACTGTGAATATTTGAAGAGATGTTGCGAGACGCTATCAGAAGAAAACCGGAGGCTACAAAAGGAGCTTCAAGAATTGAGGGCTTTGAAGGCTTCAAACTCAAACCCTTTCTTCATGCAATTACCAGCTACAACCTTGACTATGTGCCCTTCCTGTGAGCGTGTAGCACCCAATAATTCCTCCTCCAATAATAATAATAACAACAACAACAACAATAATAACAATAATTCTGGATCTGCTTCTAATTCCACCAAACCGTTTTCTGCCTTCCCCTTTTCCAAACCTAAGTTCTATCCTTTCCCTCACTCCAAACCACACCAATCTTAA 1206 0.4212 MELGLSLGASSKAFTLMEKQPSPSTELQINDLNTTLSIGPIFSNSNNKTSEEEGDQDQEQGEDDDEAKKQNQNIKFSCANSLSSSSSHLHDLLPHHSSKPLPLSSFSWPPPSDHNCDEVGGSNSVRGLKVKTMQAEEEEYSEERTVLSSSPMSGASSFHQVDLCIYSNNKSNNKAGNYYSSNNRKRKVMTMMNESEGDEGNYNYYDRQRGGCSSRASDEEDNNNIGVHGGGTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERVAPNNSSSNNNNNNNNNNNNNNSGSASNSTKPFSAFPFSKPKFYPFPHSKPHQS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1956 401 Pfam Homeodomain 233 287 IPR001356 GO:0003677
Mibi07g1956 401 SMART HOX_1 231 293 IPR001356 GO:0003677
Mibi07g1956 401 Pfam Homeobox associated leucine zipper 289 323 IPR003106 GO:0006355|GO:0043565
Mibi07g1956 401 CDD homeodomain 233 290 IPR001356 GO:0003677
Mibi07g1956 401 SUPERFAMILY Homeodomain-like 220 290 IPR009057 -
Mibi07g1956 401 MobiDBLite consensus disorder prediction 16 71 - -
Mibi07g1956 401 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 81 368 - -
Mibi07g1956 401 FunFam Homeobox-leucine zipper protein 18 217 294 - -
Mibi07g1956 401 MobiDBLite consensus disorder prediction 16 49 - -
Mibi07g1956 401 ProSiteProfiles 'Homeobox' domain profile. 229 289 IPR001356 GO:0003677
Mibi07g1956 401 CDD bZIP 282 321 - -
Mibi07g1956 401 MobiDBLite consensus disorder prediction 349 381 - -
Mibi07g1956 401 SMART halz 289 334 IPR003106 GO:0006355|GO:0043565
Mibi07g1956 401 Coils Coil 295 325 - -
Mibi07g1956 401 MobiDBLite consensus disorder prediction 195 234 - -
Mibi07g1956 401 Gene3D - 237 287 - -
Mibi07g1956 401 ProSitePatterns 'Homeobox' domain signature. 264 287 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1956 Mibi-ChrMibi07 40942859 40944972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1956 195 388 Homeobox Transcription Factor Family AT4G37790 57.216 8.61e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi07g1956 Homeodomain 3.4e-15 CL0123