Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1948 ATGGCACGAAGAAAATTAGCTATCAGCACTCTCCAGAATAGGAAGACTCGCATGGCATTGTTCGAGAGGAGGAAGAAGGGTTTACTAAAGAAAGCTTCTGAGCTTTCTACACTCTGTGGAATCGACACCTGTGTGATAATATTCCCTCCCCCAGATTCTGAAAACCTTAAAGTTGAAACCTTTCCCCAAGATCCCACTGATGTGATTCACAGATTTCAAGGGTGTAACGCAAAGAAACAAAAGAAGAAGAATTATGATCTCCGTGAGTTCTTCAATGATATGAAGAAGAAAGTTGAATCTGAGACTTCCAAAGTCATTGAACAGAGGTTGAATATGATGTGTCCAACCTGGGACGACAGTTTTGACAACATGGGAGAGGATCAGCTGAGGATGTTTGTTTCTGCATTGGATTGTAAGATTCTAGAGTGCAATCAAACAATTGGGTTGTTGTTGAAAGAAAAGGAATCAGATATGCCTGTGGTTCCAATGGGTTTTATGCAGAATGATAATTGTAAGAAAAGGAATCAGACGAAGCCCACCTGGATTTTATCTCAACCTTGGATTCTGATCTTCTAG 576 0.4045 MARRKLAISTLQNRKTRMALFERRKKGLLKKASELSTLCGIDTCVIIFPPPDSENLKVETFPQDPTDVIHRFQGCNAKKQKKKNYDLREFFNDMKKKVESETSKVIEQRLNMMCPTWDDSFDNMGEDQLRMFVSALDCKILECNQTIGLLLKEKESDMPVVPMGFMQNDNCKKRNQTKPTWILSQPWILIF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1948 191 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Mibi07g1948 191 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mibi07g1948 191 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mibi07g1948 191 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Mibi07g1948 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi07g1948 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi07g1948 191 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi07g1948 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
Mibi07g1948 191 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1948 Mibi-ChrMibi07 40841980 40842555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1948 1 147 Type I MADS-box Gene Family AT5G55690 32.051 1.40e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi07g1948 SRF-TF 1.3e-15 No_clan