Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1923 ATGACTTCTGGCTATATTCTTCTGTGTATTAATTCAAATTATGATGTGTATCAACTCAGCATCTCCAAAGAAGTTATCTGGTATTGCAAGTTCTTTGCTCGTGGAGCATGTATCAAAGGGGACCAATGTGAATATTCTCATGACAGAAAGAATCCTTCAGTTATTATCTGTAGGTTCTATCAGAAAGGAATATGTGCTTTTGGTGGTCAATGCAAGTATAAACATATCCAAACTTCTCTGGAGCAATCTTTGGAACATAGAATCCAGCTCCTGAATGTTGATAGGCATGAAAAGAGTATTAAACTTAAGCATCAAGCTCGCAAAAAGAGTTGTGATGCCAGTGAACCCAGTACTGCTTTACCATCAAGAAAAAAGTGTTATTGTGTTCCTGGAGAACGGTGTGTGTACTGTAAAACGTTCTGCTTGTATCATTCTGAACCAAATGAAAAAGAGGAGCATTTGCAGACTTGTGAGAAAAAGGAAAAGTACCTAGAGAATTTGAATAAAAGTCAAGAGATAGAGTGCAGAATCTGCTATGAACATGTTCTTTCAAAGCCTAAAGCGGATGAATGTAAGTTTGGTATTCTTTCTGCGTGCGATCATCCTTTCTGTCTGTCATGTATCAGGAATTGGCGTAGTAGTGCTCCTACCTCAGTAATAAGGTCCAGGTACAATAGAAATGTGAAGTCCTGCCCCATGTGCCGGAAATTATCATATTATGTTATTCCAAGTACTATTTGGTATTTTACAATGGAAGAGAAGCAGGAAATTGTTGACAACTACAAGACAAGCTGCAAGTTGATTAATTGCAAGCATTTTGACTTGGGAGATGGATATTGTCCATTCAGTAATATTTGTTTCTACAGGCATACTGTGAAGCCTGGCTCATATACATGGATGCATCACAGTCCACCACCACCACCTCCACCTCTGCCTCCACGTAGATCATCTCTTATGAATTTGATTGATCAACTTTATTTTCATTTGGGATATGAGATGCCTCCAAATTTGGATATTTTTTATGATACAGATCCATCAGAGATAATGCCTTTACCGGAGACACCAGTTAATTCAATACAGTTTGATGTTGACACCTCAAATGATGAAACTGACCCTTTTAGCTTGGCTGCTATGTCAGAAGTTTTGGATTCTAGTTCAGACACCATTTATTCTGAAGACTTGGATCTATTTGAGCTTATACCATCAAGTCATCAGGCCCCGGATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATGAAGAAATGGATACTGTGACTTCTTCTCCAGCGGGGGAGGGTGGTTCATCTTGGTCAGATCCTGATATGCCGCCATCAGAGACACTTGGTGTTAGTTCATCTGGTCATGAAGATCCTAAAGAATCAAATGATGAGGAGCTGAATATTGTGGAGCCATCGTATGATTCTCTGTGA 1434 0.3926 MTSGYILLCINSNYDVYQLSISKEVIWYCKFFARGACIKGDQCEYSHDRKNPSVIICRFYQKGICAFGGQCKYKHIQTSLEQSLEHRIQLLNVDRHEKSIKLKHQARKKSCDASEPSTALPSRKKCYCVPGERCVYCKTFCLYHSEPNEKEEHLQTCEKKEKYLENLNKSQEIECRICYEHVLSKPKADECKFGILSACDHPFCLSCIRNWRSSAPTSVIRSRYNRNVKSCPMCRKLSYYVIPSTIWYFTMEEKQEIVDNYKTSCKLINCKHFDLGDGYCPFSNICFYRHTVKPGSYTWMHHSPPPPPPPLPPRRSSLMNLIDQLYFHLGYEMPPNLDIFYDTDPSEIMPLPETPVNSIQFDVDTSNDETDPFSLAAMSEVLDSSSDTIYSEDLDLFELIPSSHQAPDGSWWFGIEGFDDEEMDTVTSSPAGEGGSSWSDPDMPPSETLGVSSSGHEDPKESNDEELNIVEPSYDSL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1923 477 PANTHER MAKORIN-RELATED 29 309 IPR045072 GO:0000209|GO:0061630
Mibi07g1923 477 SUPERFAMILY CCCH zinc finger 26 48 IPR036855 GO:0046872
Mibi07g1923 477 ProSitePatterns Zinc finger RING-type signature. 199 208 IPR017907 -
Mibi07g1923 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 241 IPR013083 -
Mibi07g1923 477 SMART ring_2 175 234 IPR001841 -
Mibi07g1923 477 ProSiteProfiles Zinc finger C3H1-type profile. 28 50 IPR000571 GO:0046872
Mibi07g1923 477 SUPERFAMILY CCCH zinc finger 53 75 IPR036855 GO:0046872
Mibi07g1923 477 Coils Coil 150 170 - -
Mibi07g1923 477 SMART c3hfinal6 51 77 IPR000571 GO:0046872
Mibi07g1923 477 SMART c3hfinal6 23 49 IPR000571 GO:0046872
Mibi07g1923 477 SMART c3hfinal6 264 292 IPR000571 GO:0046872
Mibi07g1923 477 MobiDBLite consensus disorder prediction 422 477 - -
Mibi07g1923 477 ProSiteProfiles Zinc finger RING-type profile. 175 235 IPR001841 -
Mibi07g1923 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 76 IPR000571 GO:0046872
Mibi07g1923 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 29 48 IPR000571 GO:0046872
Mibi07g1923 477 Gene3D - 23 87 - -
Mibi07g1923 477 ProSiteProfiles Zinc finger C3H1-type profile. 51 78 IPR000571 GO:0046872
Mibi07g1923 477 SUPERFAMILY RING/U-box 163 241 - -
Mibi07g1923 477 MobiDBLite consensus disorder prediction 429 456 - -
Mibi07g1923 477 ProSiteProfiles Zinc finger C3H1-type profile. 264 293 IPR000571 GO:0046872
Mibi07g1923 477 CDD RING-HC_MKRN 175 235 - -
Mibi07g1923 477 Pfam Zinc finger, C3HC4 type (RING finger) 175 234 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1923 Mibi-ChrMibi07 40557626 40560388 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi07g1923 zf-C3HC4 4.1e-06 CL0229