Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1908 ATGACAGATCCTCAGTCTTGGTTCAACTTCTTCCCTCTTCTTCACCCTTCTCATCAATATTCTTCCTTTACTACTTCTCATCAATCCAATGCCTCTAATTCGTTATACCCTAGTCTTCATGCTCAATACTACTCTAATAATAATCACTGCACATCATCTTCCACTCAACACCAAAGCCCTTCTTATTCCTCCTTTTTAAGCCATCCTCCAAATTCCCCTCCTCTCAAAGAAGCCCTGCCTCTCATAAACAATTTAAGCCTCACTACAAGTGAAGCCTCAAAAAGAGCCCGAGAAGAGGTAGAGGAAGAGAAGAATGAGAGAATGGAAAAAGGATATGATTACGAGGACGATGAAGATGATGAAGATAGAGGATCTTTGACTGTAGCCCTAGGAATAGGGCTTCCTACTAGTATGAACACTTCTTCTTTTCATATGGGGTCAAGAAGCCAGATCTCAAATTCTGTTGAAATGGCTGAAAAAGAGGATCTTGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTATTGGATTCCAACCCCTTCCCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAAGGGACACAACCAACGGGAATGCTAAGGCTACCATGTTATTGTTGTGCACCAGATTGCAAGCACAACATTGAACATCCAAGAGCAAGGCCTCTTAAAGACTTCAGGACTCTCCAAACTCACTACAAGAGAAAGCATGGCATCAAACCCTACATGTGCCGGAAATGTGCCAAGCCTTTCGCCGTGAAAGGCGATTGGCGGACTCACGAGAAGAATTGTGGCAAGCTCTGGTACTGTCTTTGTGGCTCTGACTTTAAACACAAAAGGTCTCTTAAAGATCACATCAAGGCCTTTGGCCATGGCCATGCTGCTTGTTGCTTGCATGATCAAGAAGATGAACCAGCTTCTGAGATTGAACAAGATGGTGAAATCTAG 1056 0.429 MTDPQSWFNFFPLLHPSHQYSSFTTSHQSNASNSLYPSLHAQYYSNNNHCTSSSTQHQSPSYSSFLSHPPNSPPLKEALPLINNLSLTTSEASKRAREEVEEEKNERMEKGYDYEDDEDDEDRGSLTVALGIGLPTSMNTSSFHMGSRSQISNSVEMAEKEDLGLVSGYPLERLNKGQYWIPTPSQILIGPTQFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCAKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIKAFGHGHAACCLHDQEDEPASEIEQDGEI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1908 351 MobiDBLite consensus disorder prediction 90 122 - -
Mibi07g1908 351 Gene3D Classic Zinc Finger 236 327 - -
Mibi07g1908 351 MobiDBLite consensus disorder prediction 47 70 - -
Mibi07g1908 351 FunFam Zinc finger protein WIP2 247 329 - -
Mibi07g1908 351 Gene3D Classic Zinc Finger 193 216 - -
Mibi07g1908 351 MobiDBLite consensus disorder prediction 92 111 - -
Mibi07g1908 351 PANTHER ZINC FINGER PROTEIN WIP2 38 347 IPR043584 GO:0003700|GO:0010468
Mibi07g1908 351 SMART c2h2final6 194 216 IPR013087 -
Mibi07g1908 351 SMART c2h2final6 278 298 IPR013087 -
Mibi07g1908 351 SMART c2h2final6 304 327 IPR013087 -
Mibi07g1908 351 MobiDBLite consensus disorder prediction 47 72 - -
Mibi07g1908 351 SUPERFAMILY beta-beta-alpha zinc fingers 262 298 IPR036236 -
Mibi07g1908 351 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Mibi07g1908 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Mibi07g1908 351 SUPERFAMILY beta-beta-alpha zinc fingers 188 216 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1908 Mibi-ChrMibi07 40070201 40074380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1908 156 347 C2H2 Transcription Factor Family AT3G57670 78.866 3.13e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi07g1908 None None None