Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1896 ATGTGCAGCGGTCCAGATAAATCAAAATCCTCTTCAACTTCATCTTCATCTACTGTAGAAGGCGCAACTAATATCCAGGACATGAAAAAGCTAACTGTTCATACGGAAGATTCTTTTTCCAGCCTACTGGAACTTGCTGCTAACAATGATGTTGAAGGCTTTAAGCTACTGCTAGATAGGGATGTTTCATCAATAAATGAAGTTGGGCTTTGGTATTGTCGTCTAATTGGGTCAAAACAAATTACTCTTGATGATAGAACTCCATTAATGGTTGCTGCAACCTATGGTAGTGTCGATGTTCTTAAGCTTATACTCTCTTATCCAGAGGCCAATGTTGATTTTGCATGCGGGATAAGCAAGAGTACTGCCCTTCACTGTGCTGCTTCAGGTGGATCAAATAATGCGGTTGATGTTGTGAAGCTTCTTTTAGAAGCTGGTGCTGATCTTAATTGCAAGGATGCTAGTGGAAATCGTCCTGTTGATGTTATTGTTGTTCATCCGAAGCTGCAAGTCATGAGAGCAATACTGGAGGAGCTTCTTTCTGATAGTGCGTCTCATGACTCCGCTGGTGACTGCTCTATTCCAGTACCTGTTACTTCATCAAGTCCGGGTTTACCTGCCCATCTATTTTCTCCGGAGAATGGATTACCGTCCTCTCCTTCAGGCTCACCTTCTTCTCCAGTGGCCTCAAAGTTCACTGATACCCCTGTTGGCTCTACCTCAGAGAAGAAGGAGTACCCCATTGATCCATCACTTCCTGACATAAAAAACAGCATTTATGCAACGGATGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCATGCTCCCGTGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGAGATCCCAGGAAATTCCATTACAGCTGCGTGCCATGCCCTGAATTTCAGAAGGGCGCTTGTAGGCGTGGGGACATGTGTGAATATGCACATGGAGTATTCGAATGCTGGCTACACCCTGCTCAGTATCGTACTCGACTCTGCAAAGATGGTACAAATTGTAACAGAAGGGTGTGCTTTTTTGCTCACACAGCAGAAGAGTTGCGTCCACTTTATGTGTCGACCGGATCTGCTGTCCCTTCTCCACGAGCATCTGCCTCTGCTCCCAATGTCATGGATATGGCTGCTGCAATGAACCTATTGCCTGGTTCTCTTTCATCAGTGTCTTCTATGTCTCCATCTCACTTTACCCAGCCGATGTCTCCATCTGGTAATGGCATCTCACACTCATCTGCACCTTGGCCACAGCCCAATGTACCAGCCCTTCATCTTCCAGGAAGTAATCTTCAATCTAGTCGCTTGAGATCCTCTCTTAGTGCTCGTGACATTCCACCACATGACTTGAACATGTTGCAAGAATTTGATGGCCAGCAACACCTCTTGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTGGTGCTGTTTCATTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAATCTCTTCATCTCCTCGGTATTCTGATCCAGCAGCGGGTTCTGTTTTTTCTCCTACACACAAATCTGCTGTTCTCAATCAGTTTCAGCAGCTTCAAAGTATGCTATCACCCATAAATACAAATGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAGGCCCCGTTTGGTGTGTCTTCTCCTGGAAGGATGTCACCCAGAAGTGTAGATCCTATGTCTCCCATGAGTTCTCGGTTATCACCATTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAGCAGCTGCGAAGTCTTAGTTCCAGGGAACTTGGTTCCCAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGGAACTCATGGTCTAATTGGGGATCTCCTACTGGGAAGGTTGATTGGTCAATGAATGGAGATGAACTGGGTCGATTGCGTAAATTGTCTTCATTCGAGCATGGGAATAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTTGTCAAGGAATCCCCTCCTGAGATGATGAGAGAGAAGTTGGCGGCTTCTGGTCCCATGGCATCTGCTGCTGAAAAACTGAATTCAATATCTCAAGTTGAATCCATTGATAATTCTGTGGTAGGAGCTTGGCTTGAGCAAATGCAGTTGGATCAGCTTGCTGTCTAG 2202 0.4573 MCSGPDKSKSSSTSSSSTVEGATNIQDMKKLTVHTEDSFSSLLELAANNDVEGFKLLLDRDVSSINEVGLWYCRLIGSKQITLDDRTPLMVAATYGSVDVLKLILSYPEANVDFACGISKSTALHCAASGGSNNAVDVVKLLLEAGADLNCKDASGNRPVDVIVVHPKLQVMRAILEELLSDSASHDSAGDCSIPVPVTSSSPGLPAHLFSPENGLPSSPSGSPSSPVASKFTDTPVGSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNGISHSSAPWPQPNVPALHLPGSNLQSSRLRSSLSARDIPPHDLNMLQEFDGQQHLLNDLGCFSQPRPGAVSLNRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNVLSPKNAEHPLLQAPFGVSSPGRMSPRSVDPMSPMSSRLSPFAQREKQQQQQQLRSLSSRELGSQIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKLSSFEHGNNGEEPDLSWVQSLVKESPPEMMREKLAASGPMASAAEKLNSISQVESIDNSVVGAWLEQMQLDQLAV 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1896 733 Pfam CCCH-type zinc finger 309 329 IPR041367 -
Mibi07g1896 733 Pfam Ankyrin repeats (3 copies) 45 153 IPR002110 GO:0005515
Mibi07g1896 733 SUPERFAMILY Ankyrin repeat 33 177 IPR036770 -
Mibi07g1896 733 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Mibi07g1896 733 MobiDBLite consensus disorder prediction 205 249 - -
Mibi07g1896 733 MobiDBLite consensus disorder prediction 568 640 - -
Mibi07g1896 733 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Mibi07g1896 733 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Mibi07g1896 733 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Mibi07g1896 733 MobiDBLite consensus disorder prediction 408 434 - -
Mibi07g1896 733 Gene3D - 13 195 IPR036770 -
Mibi07g1896 733 PANTHER UNKEMPT FAMILY MEMBER 44 683 IPR045234 -
Mibi07g1896 733 MobiDBLite consensus disorder prediction 408 432 - -
Mibi07g1896 733 Gene3D - 304 367 - -
Mibi07g1896 733 MobiDBLite consensus disorder prediction 586 640 - -
Mibi07g1896 733 MobiDBLite consensus disorder prediction 1 21 - -
Mibi07g1896 733 SMART ANK_2a 37 67 IPR002110 GO:0005515
Mibi07g1896 733 SMART ANK_2a 84 114 IPR002110 GO:0005515
Mibi07g1896 733 SMART ANK_2a 119 151 IPR002110 GO:0005515
Mibi07g1896 733 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Mibi07g1896 733 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Mibi07g1896 733 MobiDBLite consensus disorder prediction 214 240 - -
Mibi07g1896 733 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Mibi07g1896 733 FunFam Zinc finger CCCH domain-containing protein 66 262 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1896 Mibi-ChrMibi07 39729682 39731883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1896 36 730 C2H2 Transcription Factor Family AT5G12850 55.853 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi07g1896 Ank_2 8.2e-12 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g1896 07 39729682 39731883 Mibi07g1896 07 39729682 39731883 ECH