Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1890 ATGTCTCTCTTAAGGTTGCAGACAGAGAGGCAGAGAGAGAAAGGGTCTCATTTCAATGTAATACAGGCTTTCCCTCTCTCTCTTTTTAATATCTTCTTCTGGGTCTTGTTCTGCTGCTTCACAACCTGGAGGAGTAAGGAAAAGTTGGGAAGGATGCCAGGAAAACCTGAAGTGGAAGATAGTAATAGGAGGTATGAAGGTGAAGGGCAGATTCAGTTTCAATCAGGAATTTACTCTCATCAGCCGTGGTGGCGAGGTTTGGAGGAAAATGCGTCTAAATCATCATCTTCAGCACATCAGATTAGTGGTTCAGTCATGAATTCATCAGCTAATGAGGGATCAGATAAAGTTGATTTTCATAAGCAAACACAGCCTATGGTTTCATCTTCACTTTCTGCAGTTGGTGACAATGTCAACAAAGAGCACCAAAACAACAAATATGCCATGTCCTCTTCACCACATGCCATGGGCAAACACCTGGGTTCAAATTCCCAAGCCGAGCTCGTCAGTCATTCGATTGTTTTAACCTCTTACCCTTACTCAGATGCACAGTTTGCTGGAATATTGACATCTCATGGACCTCAAAATATGATAAATCCTCAGTTGTATGGAATGTACCATGCTAGAATGCCTTTGCCATTTGAGATGGAAGAAGAACCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTTGAAAGGAAAGCTATCAAAGTTAGGAAGCCATATCTTCACGAATCTCGTCACCTGCATGCTATGAGAAGGGCAAGAGGATGTGGGGGTCGCTTTCTGAATACAAAGAAGCTTGAAAATAACAATATTAATGTTGCTTCAGAAAAAGACAACAGTGGTTCAAACCATTTAGCAATATCTGCTAACACAACCTCCTCTCAGCATTCTCTGATCACCAATGAGGTTTTCAGCTCATCGAAGAACCATCATGACATATCCATGGAGCCTCAAGTATGGCTATCAAATGATAATCTTCTGAGTTGGTGGATTTGCTCAGGTGAAGAGGCTGAAGGCTTGTCTCTTGCATCTAGAAAGGAGGAAACCACCCTCACAGGCAACTCATTCTTGGCTCAGTTACTTTGGTCAAAGGGGCTGAGATCATTCTGTGATTGGTCCCCCCTTGGTTTGGTTTTATTAAATAGGTGA 1191 0.4257 MSLLRLQTERQREKGSHFNVIQAFPLSLFNIFFWVLFCCFTTWRSKEKLGRMPGKPEVEDSNRRYEGEGQIQFQSGIYSHQPWWRGLEENASKSSSSAHQISGSVMNSSANEGSDKVDFHKQTQPMVSSSLSAVGDNVNKEHQNNKYAMSSSPHAMGKHLGSNSQAELVSHSIVLTSYPYSDAQFAGILTSHGPQNMINPQLYGMYHARMPLPFEMEEEPVYVNAKQYHGILRRRQSRAKAELERKAIKVRKPYLHESRHLHAMRRARGCGGRFLNTKKLENNNINVASEKDNSGSNHLAISANTTSSQHSLITNEVFSSSKNHHDISMEPQVWLSNDNLLSWWICSGEEAEGLSLASRKEETTLTGNSFLAQLLWSKGLRSFCDWSPLGLVLLNR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1890 396 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 80 324 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 MobiDBLite consensus disorder prediction 95 116 - -
Mibi07g1890 396 ProSiteProfiles NF-YA/HAP2 family profile. 217 277 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 SMART cbf3 216 277 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 ProSitePatterns NF-YA/HAP2 subunit signature. 222 242 IPR018362 GO:0003677|GO:0016602
Mibi07g1890 396 PRINTS CCAAT-binding transcription factor subunit B signature 220 242 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 PRINTS CCAAT-binding transcription factor subunit B signature 251 274 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 MobiDBLite consensus disorder prediction 95 113 - -
Mibi07g1890 396 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 219 274 IPR001289 GO:0003700|GO:0006355
Mibi07g1890 396 Gene3D - 217 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1890 Mibi-ChrMibi07 39622719 39627196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1890 128 308 CCAAT-HAP2 Transcription Factor Family AT3G20910 44.330 6.12e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mibi07g1890 CBFB_NFYA 1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g1890 07 39622719 39627196 Mibi07g1890 07 39622719 39627196 ECH