Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1802 ATGGGGGAAAGCAGAGCCATTTTGGTTATGATTTATTTCTTGCTTTGTTCCAATCTATTTTCTATCCAATTTTTCTTTGACCCAGAGCTTCTTGGGGTTAAGGTGCATAGCTTCTACAGATGTGAAGGATGGAGTTGTTCCCCCATTGAGAACGCGCACTCGTGGCTGCTCCTCTTATTAATTATTACAGTGTGTGTCTGTTTCCTCATTTTGCATACGCCACGGCTTCATCTACCAGTACCAACTTCCCTCCTATCCCTTCTTTCCTTCGTTCATTTCATTTCCTCCCTGCAATGGCCTTTTGATCGACCCATCATTTTAGGACTGGTGGTTGCTTGTACTAGCATGGCTTCTAGCAATGCATTTTTTGATGATATACGGAGCAAATCTGAGGTTGAGCCTCCTTCAAATGAAGAGCCGATGGATATCAGTGAGCTAGTGATTGATCCTGCACCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGCCCCGTGTGCTGGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAAGTTGCAAACCCAAGGTCCACAACCGGTGTCCTACCTGTAGACTTGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATACCAGGCTTTTGGGTGTGTGGGCATATATCCGTATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGGCCATATAACTGCCCGTATGCTGGTTCAGAATGCTCTGTCATGGGTGATATTCCTTTTCTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAGTCAAACCCACAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAATATTTTTGTCTACACTTTGAAGCCTTTCAGCTGGGGACGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGCGATGATAATGAGGCAAAGAACTATACCTACAGTCTAGAGGTTGGTGGTAACGGTAGGAAGATGACTTGGCAGGGCGTGCCTAGAAGCATAAGGGATTGCCACCGCAAGGTACGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACTTGGCTCTCTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 1254 0.4466 MGESRAILVMIYFLLCSNLFSIQFFFDPELLGVKVHSFYRCEGWSCSPIENAHSWLLLLLIITVCVCFLILHTPRLHLPVPTSLLSLLSFVHFISSLQWPFDRPIILGLVVACTSMASSNAFFDDIRSKSEVEPPSNEEPMDISELVIDPAPLKSNVAVTSSVHELLECPVCWNAMYPPIHQCSNGHTLCSSCKPKVHNRCPTCRLELGNIRCLALEKVAASLELPCKYQAFGCVGIYPYYCKLKHESQCAYRPYNCPYAGSECSVMGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGTAPVYIAFLRFMGDDNEAKNYTYSLEVGGNGRKMTWQGVPRSIRDCHRKVRDSFDGLIIQRNLALFFSGGDRKELKLRVTGRIWKEQ 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1802 417 SUPERFAMILY TRAF domain-like 222 414 - -
Mibi07g1802 417 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 278 410 IPR008974 GO:0005515
Mibi07g1802 417 ProSiteProfiles Zinc finger SIAH-type profile. 222 282 IPR013010 GO:0008270
Mibi07g1802 417 FunFam E3 ubiquitin-protein ligase SINAT3 221 277 - -
Mibi07g1802 417 FunFam E3 ubiquitin-protein ligase SINAT5-like 129 220 - -
Mibi07g1802 417 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 149 416 - -
Mibi07g1802 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 221 IPR013083 -
Mibi07g1802 417 CDD Sina 283 411 - -
Mibi07g1802 417 Pfam Seven in absentia protein family 211 410 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mibi07g1802 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 277 IPR013083 -
Mibi07g1802 417 CDD RING-HC_SIAHs 167 205 - -
Mibi07g1802 417 ProSiteProfiles Zinc finger RING-type profile. 169 205 IPR001841 -
Mibi07g1802 417 SUPERFAMILY RING/U-box 160 209 - -
Mibi07g1802 417 FunFam E3 ubiquitin-protein ligase SINAT5-like 278 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1802 Mibi-ChrMibi07 37611588 37618923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1802 160 417 C3H Transcription Factor Family AT2G41980 78.682 1.14e-156 442