Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi07g1785 | ATGGTTGGTCTTCAAAATCCCAACCAGCTCATCCTAAGTCTGTGCGCAATCATTGTGAAGGGACATTGGAGTAATCTGTTGAAGTTGGAGAAGGCTTCTGCTCTCACTTCTTCCACCATTCACCAGGTACTTCTGCAATTATCTCTCCATGGATTTTCTCCATCTCATTCCTTCTCATTCTTCAAATGGGTCGAGACAGTTCCAAATTATAAGCACTCTTTGCAATGTTCATGGTCCATGCTTCATATCTTAGTAAAGCATAAACATTTTAGAACTGCACAAGAGATGCTTGAGAAAATTGCCCACAGGGATTTCCTTTCGTCGCCATCAGTTTTGAGAACTTTGATTGAAATTCAACTTGACCCAGAAGTGAATTCGCATATATTGAGCTGGCTTGTAATTTATTATGCAAAATCAAAGATGACCCATGATGCCATCCAGGTTTTTGAGGAGATGAGGTTATGTAATTTGAACCTTCATTTGCATGCTTGTACTGTGCTTCTGAATTCTCTGGTCAAGGATGGGGTTACCAACATGGTATGGAAGGTGTACAAACAAATGGTTAAAGCTGGTGTTTCTCCTAATATGCATATATATAATGTGTTGTTACATGCTTGTTCAAAATCAGGAGATTTAGAGAGGGCAGAACATTTATTGAATGAGATGGAAGTGAAGGGCGTTTTGCCTGATATTTTCACTTACAATACTTTGATATCACTGTATTGCAAGAGAAGTATGCACTATGAGGCTTTATCTATCCAGGACAGAATGGAAAGTGAAGGAATAAATCTTGACATTGTTAGTTATAATTCTCTTATTTATGGATTTTGTAGAGAGGGTAGGATGAGAGAAGCCATGAGGATGTTCAGCAACATCAAAGGTGCAACTCCCAATAATGTTACATACACGTCATTGATTGATGGGTATTGCAAAACAAATGACCTGGAGCAAGCTCTGAAACTGTGTGAGATGATGCAGGCTAAGGGATTGTACCCTGGTGTTGTTACTTATAATTCAATTTTACGTAAGCTGTGTCAGGATGGCAGAATAAGAGAGGCAAATAAACTTTTGATGGAGATGAGTGAAAGAAAAATTCAGCCTGATACTGTTACATGTAACACATTGATTAATGCTTATTGCAAAATAGGAGATATGAAATCTGCATTGAAATTTAAGAACAAGATGTCAGAGGCAGGACTGAAACCTGACCCATTTACGTATAAAGCATTAATTCATGGTTTTTGCAAGATAAAAGATCTGGAAAGGGCCATGGAGATGTTGTTTTCCATGCTTGATGCTGGTTTTTCCCCCAATTATTACACTTATTCGTGGATCGTAGATGGTTACTGCAATAAAGACAATGAAGATGCAGTTGTTACACTCCCCAATGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAGTTAGAAAGAATGCCTTGTGCTTTGAAGTTACTTAACCATATGGAAGCGACGGGAATATCAGGTGACTGCGTTGTCTACACAAGCCTTGCTTATGCATATTGGAAATTAGGGAATGCAAAGTTTGCAGCAAATATATTAGAAGAGATGACCAAAAGGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTGATCCTCGTGGTACTGAGAATCACAGTTCATGTTCATTCTGGAACTATGTGGCGGAAAGGGGTCTTATGTCAAGAAATACAATGAATAAAATAAAGCAAATGGAATTATAA | 1764 | 0.377 | MVGLQNPNQLILSLCAIIVKGHWSNLLKLEKASALTSSTIHQVLLQLSLHGFSPSHSFSFFKWVETVPNYKHSLQCSWSMLHILVKHKHFRTAQEMLEKIAHRDFLSSPSVLRTLIEIQLDPEVNSHILSWLVIYYAKSKMTHDAIQVFEEMRLCNLNLHLHACTVLLNSLVKDGVTNMVWKVYKQMVKAGVSPNMHIYNVLLHACSKSGDLERAEHLLNEMEVKGVLPDIFTYNTLISLYCKRSMHYEALSIQDRMESEGINLDIVSYNSLIYGFCREGRMREAMRMFSNIKGATPNNVTYTSLIDGYCKTNDLEQALKLCEMMQAKGLYPGVVTYNSILRKLCQDGRIREANKLLMEMSERKIQPDTVTCNTLINAYCKIGDMKSALKFKNKMSEAGLKPDPFTYKALIHGFCKIKDLERAMEMLFSMLDAGFSPNYYTYSWIVDGYCNKDNEDAVVTLPNEFLRRGLCIDVSIYRALIRRLCKLERMPCALKLLNHMEATGISGDCVVYTSLAYAYWKLGNAKFAANILEEMTKRRLMITSKIYKCFGDPRGTENHSSCSFWNYVAERGLMSRNTMNKIKQMEL | 587 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi07g1785 | 587 | Pfam | Pentacotripeptide-repeat region of PRORP | 137 | 275 | IPR033443 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 163 | 195 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 476 | 509 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 267 | 291 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 300 | 333 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 370 | 403 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 335 | 369 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 198 | 231 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 232 | 265 | IPR002885 | - | |
| Mibi07g1785 | 587 | TIGRFAM | PPR: pentatricopeptide repeat domain | 405 | 438 | IPR002885 | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 368 | 402 | IPR002885 | - | |
| Mibi07g1785 | 587 | Pfam | PPR repeat family | 367 | 416 | IPR002885 | - | |
| Mibi07g1785 | 587 | Gene3D | Tetratricopeptide repeat domain | 208 | 294 | IPR011990 | GO:0005515 | |
| Mibi07g1785 | 587 | Gene3D | Tetratricopeptide repeat domain | 111 | 207 | IPR011990 | GO:0005515 | |
| Mibi07g1785 | 587 | Gene3D | Tetratricopeptide repeat domain | 364 | 461 | IPR011990 | GO:0005515 | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 333 | 367 | IPR002885 | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 298 | 332 | IPR002885 | - | |
| Mibi07g1785 | 587 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL | 37 | 361 | - | - | |
| Mibi07g1785 | 587 | Gene3D | Tetratricopeptide repeat domain | 462 | 553 | IPR011990 | GO:0005515 | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 230 | 264 | IPR002885 | - | |
| Mibi07g1785 | 587 | Pfam | PPR repeat | 293 | 325 | IPR002885 | - | |
| Mibi07g1785 | 587 | Pfam | PPR repeat | 328 | 361 | IPR002885 | - | |
| Mibi07g1785 | 587 | Gene3D | Tetratricopeptide repeat domain | 295 | 363 | IPR011990 | GO:0005515 | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 160 | 194 | IPR002885 | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 265 | 295 | IPR002885 | - | |
| Mibi07g1785 | 587 | Pfam | Pentatricopeptide repeat domain | 495 | 540 | IPR002885 | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 473 | 507 | IPR002885 | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 403 | 437 | IPR002885 | - | |
| Mibi07g1785 | 587 | SUPERFAMILY | HCP-like | 302 | 451 | - | - | |
| Mibi07g1785 | 587 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 195 | 229 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi07g1785 | 182 | 554 | Glycosyltransferase | AT1G05670 | 33.333 | 2.71e-66 | 228 |