Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1780 ATGAGTCCACCTGCTGAGGAAAGGATGGAAGATGTTAAGCCATTAGCTGCCTCAGCCAACAGCTCACAGGCCCATGGTGAATGTGGTGACCCTGCTGAGGCTCGATTCGCTGAATTCTGCAAGGATGGGCTATCATTGGATGATGAAAGTTGCAGACAAGCAATGAAGCTGTTCATAGAAACCAAACACCTTCTACAGACCAATATATCATCTCTTGGAAATGGAACGCATGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCCTTTACTGTATCAAGAGATTGGCCGACAAGCATACAGACAGTGAGAAGAAAGTGACCTGTAGCAATGGACTTACCTTGTGCCAGATATTGAGGAAGGCAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTTCAATTTTAAGTAATATATATGGCGCAGATTGGGAAAGCAGGCTAGAGGCGAAGGAGTTGCATGCAAACTTTCTTCACTTAACCATTCTTAGCAAGTACTATAAACGTGCATTCGGGGAGTTCTTCTTGGCAAATGATGCTATTGAAAAAAATTCAGCTGTTTCCTTGACTGGTGGTTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTCCTGGCTCTTCGTGTCCATGCCTTCGGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGCTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCTCGCTTCAGAAATTTCAACATTCATGACGCATCGCGCTTCGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCTATGAAACTTCAGAAGATGATGTGAGAAAAACCATGGAGAAAGCCAATAATTTAATTGCAGATATCTTGAAGAAGAAGCCTTGTCTGGCATCTGAATGCGAAACTGCGACACTTGAGAATATTGATAGAGATGGTTTGTTCTACTTTAATGATCTAATGGAAGAATCATCTCTGCCATCGTGTTTAAATATCTTAGAGAAAGATTATGAGGATGCCATTCATGACAATGGTGAGCTGGACGAGAGGCTGTTTATCAATGAGGAGGACAGCTTACTAGCTTCAGGAAGCTTATCTGGAGGTTCAATGTCAGCAAGCGGTGTCAAGAGGAAATTTGATTCACTGGCGTCACCTTCAAAGACAATTACCAGTCCACTCTCTCCCCAACGCTCTCCTGCATCTCATCATGTAAATGGCATTCCAATTAGTGCAAATTCAAAGATGGCAGCCACCCCTGTAACTACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATTTGCCCGCTCCCACCAAAGCCTTCACCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGACGTCACAAGTGATGTTGTGCGCAGGGCTCAGATTATATTGCAGGCTATATTTCCTAGCAGTCCTTTAGGAGAGAGATGTTTAACTGGAAGCCTTTCAAGCTCAAGCCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCTTGGAGGCAATGTGTAGAGCAGAAGCCCAAATACTGCATGCAATCAATTTGACCTCGTTATTAACTAATGAGAGGTTCCATCGATGCATGCTTGCATGTTCTGCGGAACTAGTGCTGGCAACACATAAGACTGTGACAATGTTGTTTCCTGCAGTGCTGGAAAGGACAGGAATTACAGCCTTTGACCTGAGCAAGGTGATAGAAAGCTTTATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGCCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCCTCAATGTATAATTCTTTAACAGTTGCCAGACCTTCCCTCTCTTCAGAAATAAATCGTCTTGGATTGTTAGCTGAACCGATGCCTTCATTAGATGCAATTGCAACGCATATTAACTTCTCTTGTGGTGGGCTGCCCCCTGGGCCTTCCATACAGAAGCATGAGGCTTTACCAAGTCAAAATGGGGATATCATGTCCCCAAAACGACACTGCACAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAATCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCCAATCCAGGAGGTGGAGGGGAGACTTGCGCAGAAACAGGAATCAATATCTTTTTTGGAAAGATTATTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAGCTGTCTCAACAGATAAGAGAGAACGTGTACTGTCTTTTTCAGCAGATACTAAATCAAAGGACATCACTTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCCCAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACCGGACAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTTATCCCCTCTGTAAAAGCTCTGCTGGTTGAACTTGGTCCTGGGGGAACAACTACGAAAGCCAACCGGATACCTGAAGCCAACAATAACAATGATGGCCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCACCTTTTCCTAGCCTTCCTGATATGTCCCCAAAGAAAGTATCTGCGTCACACAATGTATATGTCTCACCATTGAGATCAGCCAAGATGGATGCTCTAATATCACATAGCTCAAAAAGCTACTATGCCTGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCGAAAGACCTGACTGCCATCAACAACCGTTTGAATGGCACGCGCAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTGGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTCTATCTTCAGAATGGGAGTTGCGCATCATCATCAGGGGCAACAGTGAAGTCTGAGCAGCCAGATAGTTGA 3099 0.4337 MSPPAEERMEDVKPLAASANSSQAHGECGDPAEARFAEFCKDGLSLDDESCRQAMKLFIETKHLLQTNISSLGNGTHEEAERYWFSFVLYCIKRLADKHTDSEKKVTCSNGLTLCQILRKAKLNIVDFFKELPQFLVKGGSILSNIYGADWESRLEAKELHANFLHLTILSKYYKRAFGEFFLANDAIEKNSAVSLTGGYASQYHRFGWLVFLALRVHAFGRFKDLVTCTNGLVSILAILIIHIPARFRNFNIHDASRFVKKSSKGVDIIASLCNIYETSEDDVRKTMEKANNLIADILKKKPCLASECETATLENIDRDGLFYFNDLMEESSLPSCLNILEKDYEDAIHDNGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPSKTITSPLSPQRSPASHHVNGIPISANSKMAATPVTTAMTTAKWLRTVICPLPPKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPSSPLGERCLTGSLSSSSLMDNVWAEQRRLEALKLYYRVLEAMCRAEAQILHAINLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEINRLGLLAEPMPSLDAIATHINFSCGGLPPGPSIQKHEALPSQNGDIMSPKRHCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIIKLAAVRISGMVERLQLSQQIRENVYCLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEANNNNDGHLAQCPGSPKISPFPSLPDMSPKKVSASHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGATVKSEQPDS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1780 1032 Pfam Domain of unknown function (DUF3452) 106 243 IPR024599 -
Mibi07g1780 1032 MobiDBLite consensus disorder prediction 394 415 - -
Mibi07g1780 1032 SMART DUF3452_2 101 243 IPR024599 -
Mibi07g1780 1032 SMART RB_A_2 426 627 IPR002720 GO:0005634|GO:0051726
Mibi07g1780 1032 FunFam Retinoblastoma-related protein 1 701 913 - -
Mibi07g1780 1032 FunFam Retinoblastoma-related protein 1 429 617 - -
Mibi07g1780 1032 Pfam Retinoblastoma-associated protein A domain 426 627 IPR002720 GO:0005634|GO:0051726
Mibi07g1780 1032 Gene3D - 709 901 - -
Mibi07g1780 1032 Gene3D - 429 617 - -
Mibi07g1780 1032 Coils Coil 338 358 - -
Mibi07g1780 1032 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 31 1030 IPR028309 GO:0006357|GO:0051726
Mibi07g1780 1032 Gene3D - 204 362 - -
Mibi07g1780 1032 FunFam Retinoblastoma-related protein 1 204 362 - -
Mibi07g1780 1032 SUPERFAMILY Cyclin-like 748 920 IPR036915 -
Mibi07g1780 1032 SUPERFAMILY Cyclin-like 434 629 IPR036915 -
Mibi07g1780 1032 MobiDBLite consensus disorder prediction 1 26 - -
Mibi07g1780 1032 Pfam Retinoblastoma-associated protein B domain 750 877 IPR002719 GO:0005634|GO:0051726
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1780 29 1032 Core Cell Cycle Gene Families AT3G12280 71.105 0.0 1422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mibi07g1780 RB_A 3.8e-64 CL0065