Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1655 ATGCCAAAGAAGAAGCAGCACAGCGACAGCGATGAAGAAGACATCTTTTATTACCGCTATGCTTCCTCTTCTGCTTCTTCAGCGCCTTCTTCAAACTCCCTGAGAACTCTCAAGGTTCACGGCGGCTCTGGTGGGTTGGCTCCATCTAAATCCACCCTCTACGTCTCCAACCTTGACTTCTCCCTCACTAACTCCGACCTCAACACCCTCTTCTCCACCTTCGGAAAGATCGCTCGAGTCACAGTCCTCAAGGACCGAGTCACTCGCCAGAGCCGTGGCGTTGCTTTCATCCAATATGTTTCTCGCGATGATGCAATAAAAGCTGCCCGTGAGATGAACCACAAAATCCTCAATGGTAGGACCTTGACTGCTTCCATTGCCGCTGATAATGGCCGAGCTCCAGAATTTATAAAGAAAAGGGTTTATAAGGATAAGAGTCGGTGTTATGAGTGTGGGGAAGGAGGACATTTGTCTTATGAGTGTCCCAAGAATCAATTGGGGCCAAGGGAGCGTCCGGTTCCCAAGCGTGAACGACACAGCAGTGGGGGTGGTTACCGGCGGACTGAGGATGATGATGACGGATCTGATGGTGGTGATAGGTTTGAAGATGATAATTGGGCTTCTATTGTGGATAATGGAGCGGATGAAAGGTTGTTGACGGGTAATGAGAAGGTTGTGGAGAAAAAGAAGGCAAAAAAAGTAAGCTATTTCAGTGATGAGAGTGGTGATGAAGATGATTGA 741 0.4831 MPKKKQHSDSDEEDIFYYRYASSSASSAPSSNSLRTLKVHGGSGGLAPSKSTLYVSNLDFSLTNSDLNTLFSTFGKIARVTVLKDRVTRQSRGVAFIQYVSRDDAIKAAREMNHKILNGRTLTASIAADNGRAPEFIKKRVYKDKSRCYECGEGGHLSYECPKNQLGPRERPVPKRERHSSGGGYRRTEDDDDGSDGGDRFEDDNWASIVDNGADERLLTGNEKVVEKKKAKKVSYFSDESGDEDD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1655 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Mibi07g1655 246 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 6 245 IPR044598 GO:0000398|GO:0005689
Mibi07g1655 246 MobiDBLite consensus disorder prediction 159 214 - -
Mibi07g1655 246 SUPERFAMILY Retrovirus zinc finger-like domains 133 164 IPR036875 GO:0003676|GO:0008270
Mibi07g1655 246 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 135 - -
Mibi07g1655 246 MobiDBLite consensus disorder prediction 169 206 - -
Mibi07g1655 246 SUPERFAMILY RNA-binding domain, RBD 48 133 IPR035979 GO:0003676
Mibi07g1655 246 CDD RRM_ZCRB1 50 127 IPR034219 -
Mibi07g1655 246 Gene3D - 138 172 - -
Mibi07g1655 246 FunFam Zinc finger CCHC-type and RNA-binding motif-containing protein 1 137 181 - -
Mibi07g1655 246 ProSiteProfiles Zinc finger CCHC-type profile. 147 163 IPR001878 GO:0003676|GO:0008270
Mibi07g1655 246 Gene3D - 38 204 IPR012677 -
Mibi07g1655 246 Pfam Zinc knuckle 147 163 IPR001878 GO:0003676|GO:0008270
Mibi07g1655 246 SMART c2hcfinal6 147 163 IPR001878 GO:0003676|GO:0008270
Mibi07g1655 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Mibi07g1655 246 SMART rrm2_1 52 125 IPR003954 GO:0003676
Mibi07g1655 246 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1655 Mibi-ChrMibi07 32077407 32078147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1655 51 127 Eukaryotic Initiation Factors Gene Family AT4G34110 31.169 2.46e-07 49.3