Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1559 ATGACATCAGGAAACAGATGCCACTATGAAGTCCTTGGCCTCGAGCGTGAATGTACTCCTGATGAAATACGGTCAGCATATAGGCGTCTCGCCCTTCAACGCCATCCTGACAAGCTGGTCAAATCTGGCTTATCACAAGCTGAAGCCACAGCTCAATTCCAAGAGCTACAACATGCCTATGAAGTCCTTTCTGACCCTAAAGAGCGAGCATGGTATGATTCCCACCGGTCTCAGATTCTCTTTTCTGACCCTAACTCAGCTGGAAACTCAGACCCTAACTCGTTCATCCCAAACCTGTTTTCCTTCTTTTCTACAAATGTTTATTCTGGATATTCAGACACTGGCAAGGGATTCTACAAGGTATATTGTGATATTTTTGATAAAATTCACGCCAATGAAATTAACTTTGCCAAGACATTAGGACTAGGTATTGATGCGGTCCGACAAGCGCCAGTAATGGGCAATTTGAATAGCCCTTATGCTCAAGTGACAGCATTTTACAATTACTGGTTGGGTTTTTCAACAGTTATGGATTTTTGTTGGGTGGATGAGTATGATGTTATGGCTGGGCCTAACCGTAAGTCGAGGCGTCTTATGGAGGAAGAGAACAGCAAGATCAGAAAGAAGGCAAAGAAAGAGTACAATGACACAGTGCGGAAGTTGGCTGAATTTGTCAAGAAGAGGGATAAAAGGGTGATTGATATGAAGATGAAGAAGAGTATGGAAATGGAAAAGAAGAAGGAGGAGGAGAGGGAGAGGAAGAGGCAGTTGGAGAAGGAGAGAAAGGAGAGAGCAATGGCATATGAAGAGCCTGAGTGGGCCAAAGTTGAGGAGGATGAAGAAGATGAGGCTGATTGGTTTGAGGAGGAAAGTAAGAAGAAGAATGCTGAGAATGAATTTTATTGTGTACTGTGTGGTAAGAAGTTCAAGAGTGAGAAGCAATGGAAGAACCATGAGCAATCAAAGAAGCATAAGGAGACGGTTGCGGAATTTAGGGATTCACTTGATGACGAAGAGGATGTGGAAGTTGAAGTGGAAGCAGAAGAAAGAGAAGGTAAGTTGAGCTCAGGAAGTTATGAAGACAAATTTGGGGAGAATGATGATATATCTGGGAGCACTGATAATGAGATTGACAATTTAGAAGGGAGAATTAGAGATGGTCTCAATGTTGCAGAGGGCGTGACAACAAATGGGGTTGAGTTGAGTGAAGGAGAAGAGGAAGAAGAATTTCTCAATGCTCAGCATCCAGAAGTGGAGGAGGCTAGTGTCTCAGGGGATTTTGATGGAGAAGAAGATGCTGATGAATTGGGTGTACTTGAAGCCAGGGCTGGGCAAAGGAACAGAAAAACTGGTGCCTCAAGGCAGGAGCACAAGGCTTCAATGAGTACATCTCAAAATGATACTGAGAGTGATGAAGTTGGTTTTATGGAATATGACAATCGAAAGAATTCAAGAAAGAAACGTGGAGCTAAAAAACAGAAAGGAAGAAAAAATACTGAAGAATTGAAGGCGACAACTAGTAACAGTGATTTTCAGAATGAAAAAAATATCGCTGGTGATGAATCTCAGGGAGAAGAGTCTTCTCCGTTTGATGTTGGAAACGAGATTAATTGTACAGAAAATGGGCAGGTCCTTGGAGATAAGAAAGCTTTTAATCAACGTATTGATAAAAAAGAAGCTGCAAAGGATACAATAAGCAATGGAAAAAATTTCACCAAAACAAGAAAAACCAAGGGGACATCAAAGAATCTTGCCAATATCTGCGAGGCTTGCGGAGAGGAGTTTGAGTCAAGGAATCGATTGCATAAACATCTGGGGGAAACCGGGCATGCGACTATAAAATCCACAAGGAAGCGTCGCTAG 1863 0.4235 MTSGNRCHYEVLGLERECTPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSAGNSDPNSFIPNLFSFFSTNVYSGYSDTGKGFYKVYCDIFDKIHANEINFAKTLGLGIDAVRQAPVMGNLNSPYAQVTAFYNYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEEENSKIRKKAKKEYNDTVRKLAEFVKKRDKRVIDMKMKKSMEMEKKKEEERERKRQLEKERKERAMAYEEPEWAKVEEDEEDEADWFEEESKKKNAENEFYCVLCGKKFKSEKQWKNHEQSKKHKETVAEFRDSLDDEEDVEVEVEAEEREGKLSSGSYEDKFGENDDISGSTDNEIDNLEGRIRDGLNVAEGVTTNGVELSEGEEEEEFLNAQHPEVEEASVSGDFDGEEDADELGVLEARAGQRNRKTGASRQEHKASMSTSQNDTESDEVGFMEYDNRKNSRKKRGAKKQKGRKNTEELKATTSNSDFQNEKNIAGDESQGEESSPFDVGNEINCTENGQVLGDKKAFNQRIDKKEAAKDTISNGKNFTKTRKTKGTSKNLANICEACGEEFESRNRLHKHLGETGHATIKSTRKRR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1559 620 SUPERFAMILY beta-beta-alpha zinc fingers 293 342 IPR036236 -
Mibi07g1559 620 CDD DnaJ 7 65 IPR001623 -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 315 378 - -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 456 471 - -
Mibi07g1559 620 PRINTS DnaJ domain signature 9 27 IPR001623 -
Mibi07g1559 620 PRINTS DnaJ domain signature 48 68 IPR001623 -
Mibi07g1559 620 PRINTS DnaJ domain signature 27 42 IPR001623 -
Mibi07g1559 620 ProSiteProfiles Zinc finger C2H2 type domain profile. 586 615 IPR013087 -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 436 455 - -
Mibi07g1559 620 Gene3D DnaJ domain 1 89 IPR036869 -
Mibi07g1559 620 SUPERFAMILY Chaperone J-domain 4 102 IPR036869 -
Mibi07g1559 620 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Mibi07g1559 620 Pfam Zinc-finger double-stranded RNA-binding 300 325 IPR022755 -
Mibi07g1559 620 SMART dnaj_3 6 68 IPR001623 -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 347 369 - -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 315 332 - -
Mibi07g1559 620 SMART ZnF_U1_5 297 331 IPR003604 GO:0003676|GO:0008270
Mibi07g1559 620 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 3 615 IPR044648 -
Mibi07g1559 620 SMART c2h2final6 300 324 IPR013087 -
Mibi07g1559 620 SMART c2h2final6 586 610 IPR013087 -
Mibi07g1559 620 Coils Coil 233 267 - -
Mibi07g1559 620 ProSitePatterns Zinc finger C2H2 type domain signature. 588 610 IPR013087 -
Mibi07g1559 620 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Mibi07g1559 620 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Mibi07g1559 620 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 329 IPR013087 -
Mibi07g1559 620 Pfam DnaJ domain 8 73 IPR001623 -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 504 518 - -
Mibi07g1559 620 MobiDBLite consensus disorder prediction 398 538 - -
Mibi07g1559 620 Gene3D Classic Zinc Finger 288 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1559 Mibi-ChrMibi07 29005155 29007533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1559 6 615 C2H2 Transcription Factor Family AT1G74250 49.615 4.86e-176 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi07g1559 DnaJ 1e-21 CL0392