Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1520 ATGGACGCTCTTGAATCAAACCCTAATCCTCCTCCTCTTCCTCCCTCCGAAACACTCGCTTCGTACGATCACAACCCTACTCCTCCACCGCCTGAAAGTCTCGCATCAGATCTCCACAAGCCATACGAGCAAACCGCGAATTTCGATTATCAAAATTCCTCGAAAACCCTAACTTCCGATGGCCAAGACGTTAACGGTGTACCTCAATCGGTTAACGGTAACGGCTACATAAACGGGATGGAGAACAGTCATGGCGGTGCCGATAGCAATAGCAATTCGAGGCCTGTGAGTGTGAGGCCTTTGATTTCTGAGAGTGGTACGGACAAGGATCAGTCTGGTGGGGAAGAGGAAACTACGAGCAAACGCCGTCGTCGGAGTCGGTGGGACCCGCAACCCGATTCGAATGACCAGAGTGGTGGTGAAGCTGGAAGTGGACCGAAGAAGAGGAAGTCACGTTGGGCTGATGATGAGCCAAAGCCTGTGATTCAGCTTCCTGATTTCATGGGAGGTATTGAGTTTGATCCTGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGTATGTTGCAATCAGGTTTGCCTTTGGATGATCGACCTGAAGGGGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGAATTAGAATTAATACTAGAGAATATCGTGCAAGGGAAAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATTAAGAAAAACCCGGCATTTAAGCCACCTGCTGATTATAGGCCACCAAAGCTTCAGAAGAAGCTGTATATACCAATGAAGGAATATCCCGGTTACAACTTTATAGGGCTTATTATTGGTCCTCGAGGGAATACTCAGAAGCGGATGGAAAGAGAGACTGGTGCTAAAATTGTGATAAGGGGTAAAGGGTCTGTGAAAGAGGGTAGATTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAGGATTTGCATGTCCTTGTGGAGGCAGATACACAAGAATCACTTGAAGCTGCCGCTGGTATGGTGGAGAAGCTCTTGCAACCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGTTAAGGGAACTTGCAGCCTTGAATGGTACAATTCGGGATGAGGAATATTGCAGGCTGTGTGGTGAACCTGGCCATCGCCAGTATGCGTGTCCTACTCGCACTTCTACGTTTAAGAGTGAAGTGGTTTGTAAGCATTGTGGGGATGGTGGTCACCCCAGCATAGATTGTCCAGTGAAGGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAAAACTTCTTGGCCGAGCTGGGAGGTACAGTTCCGGAATCGTCAATAAAGCAGAACCCCACGTTGGCAATTGGTTCAGGCACAGGCAATGCTGGAAGCAATCCTCCTTGGGCTAACAGTTCTGGATCGACTGGTGGTACTTCAACACCTGGCTTAGGTTCTAATCCAATTAAGAAGGAAATTGATGACACAAATTTGTACATTGGGTATTTACCACCCACTCTTGATGATGATGGTTTGATCCAATTGTTTCAACAATTTGGTGAGATCGTTATGGCAAAGGTTATAAAAGACCGGATGACTGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATATCCAAATGGCGAATAACGCAATTGTGGCCATGAATGGCTATCGCCTTGAGGGCAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCGACTGTGCCTCCTGGCCCACCTGCATCAGCCATGCCCACATATCCTATTTCAAGTCAACCTATTGGTGCCTATCCATCCCAACAATATGCAGCTGGTGGTCCTCTTGGTACTGCACCACCCCCTGGAAGTTATGCAGGCGCCCCAGTCCCATGGGGACCTCCTGTTCCTCCACCATATGCTTCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCACCACCATATGGTGTTCAGTATCCTCCAGTCCAGACAGCCCCACCAGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAATCACAACAGAGTTTCCCTCCAGGAGTGCAATCTGACAATAATACCTCCGCCCAATCTACATCAGCCAATATTTATGGGAGTTCAGTACCTATGCCACCAGCTGCCCAACCTGCATATGCCACATCTTATGGTTATCCGCCTTACTATGGTGCAGTTCCCCCTCCACCTCCCCCTGCACCCATCTCGAATTCAGACCATATGCCTTGGGCTACCAATCCTCCAGTGCCGCCTCCTGCACCAACCGCAGAAAAGACGCCATATGGTGCAGATCAATCACAGAGCATAGGGAATATTCCGAGTATGAGAAGTTCATGGCAGAGATGA 2367 0.482 MDALESNPNPPPLPPSETLASYDHNPTPPPPESLASDLHKPYEQTANFDYQNSSKTLTSDGQDVNGVPQSVNGNGYINGMENSHGGADSNSNSRPVSVRPLISESGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESSIKQNPTLAIGSGTGNAGSNPPWANSSGSTGGTSTPGLGSNPIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADIQMANNAIVAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPIGAYPSQQYAAGGPLGTAPPPGSYAGAPVPWGPPVPPPYASYAPPPPGSTMYPPPPYGVQYPPVQTAPPGAPSQPATSSESQQSFPPGVQSDNNTSAQSTSANIYGSSVPMPPAAQPAYATSYGYPPYYGAVPPPPPPAPISNSDHMPWATNPPVPPPAPTAEKTPYGADQSQSIGNIPSMRSSWQR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1520 788 MobiDBLite consensus disorder prediction 655 671 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 1 163 - -
Mibi07g1520 788 FunFam splicing factor 1 380 433 - -
Mibi07g1520 788 CDD SF1_like-KH 261 377 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 578 594 - -
Mibi07g1520 788 FunFam splicing factor-like protein 1 479 581 - -
Mibi07g1520 788 Gene3D - 381 433 - -
Mibi07g1520 788 SMART c2hcfinal6 407 423 IPR001878 GO:0003676|GO:0008270
Mibi07g1520 788 SMART c2hcfinal6 381 397 IPR001878 GO:0003676|GO:0008270
Mibi07g1520 788 MobiDBLite consensus disorder prediction 109 131 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 196 215 - -
Mibi07g1520 788 PANTHER RNA-BINDING PROTEIN RELATED 110 620 IPR045071 -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 731 788 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 655 714 - -
Mibi07g1520 788 Pfam KH domain 275 347 IPR004088 GO:0003723
Mibi07g1520 788 SMART rrm1_1 500 573 IPR000504 GO:0003723
Mibi07g1520 788 SMART kh_6 260 352 IPR004087 GO:0003676
Mibi07g1520 788 MobiDBLite consensus disorder prediction 447 489 - -
Mibi07g1520 788 ProSiteProfiles Zinc finger CCHC-type profile. 408 422 IPR001878 GO:0003676|GO:0008270
Mibi07g1520 788 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 260 386 IPR036612 GO:0003723
Mibi07g1520 788 Gene3D - 474 582 IPR012677 -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 672 708 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 446 491 - -
Mibi07g1520 788 Gene3D - 174 251 - -
Mibi07g1520 788 Pfam Splicing factor 1 helix-hairpin domain 149 256 IPR032570 -
Mibi07g1520 788 SUPERFAMILY Retrovirus zinc finger-like domains 378 424 IPR036875 GO:0003676|GO:0008270
Mibi07g1520 788 MobiDBLite consensus disorder prediction 143 159 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 45 108 - -
Mibi07g1520 788 SUPERFAMILY RNA-binding domain, RBD 495 588 IPR035979 GO:0003676
Mibi07g1520 788 ProSiteProfiles Type-1 KH domain profile. 275 347 - -
Mibi07g1520 788 MobiDBLite consensus disorder prediction 577 598 - -
Mibi07g1520 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 577 IPR000504 GO:0003723
Mibi07g1520 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 570 IPR000504 GO:0003723
Mibi07g1520 788 MobiDBLite consensus disorder prediction 767 788 - -
Mibi07g1520 788 FunFam splicing factor-like protein 1 252 380 - -
Mibi07g1520 788 Gene3D K Homology domain, type 1 252 380 IPR036612 GO:0003723
Mibi07g1520 788 ProSiteProfiles Zinc finger CCHC-type profile. 382 396 IPR001878 GO:0003676|GO:0008270
Mibi07g1520 788 MobiDBLite consensus disorder prediction 305 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1520 Mibi-ChrMibi07 27780056 27782492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1520 406 582 Eukaryotic Initiation Factors Gene Family AT3G11400 25.843 1.22e-10 62.0