Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1423 ATGAGCAGTCCTATATGTGAATATCAGATGGGGAGGGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAATAGGCAGGTGACATTCTGCAAAAGAAGGAACGGTCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCTGAAGTTTCCCTAATCGTCTTCTCCAATCGTGGTCGTCTCTACGAGTACTCCAACACCAACATAAGGTCAACTATTGAGAGGTATAAAAAGGCATGTTCAGACCATTCAAGTACAAGCTCTACTATTGAAATCAATGCCCAGTATTATCAACAAGAATCTGCAAAGCTACGACAACAGATTCAAATGCTGCAAAGTTCTAATAGGCACTTGATGGGTGATGCCTTGAGCACTCTGAATGTCAAGGAGTTGAAGCAGCTGGAGAATAGACTTGAACGAGGGATCTCTAGAATCAGGTCCAAAAAGCATGAGATGCTGCTGACAGAAATCGAATACATGCAGAAGAGGGAGATGGAACTTGAAAATGAAAACCTTTGCATTCGGACTAAGATAGCACAAGTGGAGAGGGAAGAAGAAGATAATATGGTATCAGCTGGAGGGCAAGAACTGAGTGCCATCCAAGCTTTGGCTTCTAGAAATTACTTCAATATTCATACTAATGCATCACCTGACAACAAAAATCCACGCCTTGGGTAG 684 0.4181 MSSPICEYQMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSNRGRLYEYSNTNIRSTIERYKKACSDHSSTSSTIEINAQYYQQESAKLRQQIQMLQSSNRHLMGDALSTLNVKELKQLENRLERGISRIRSKKHEMLLTEIEYMQKREMELENENLCIRTKIAQVEREEEDNMVSAGGQELSAIQALASRNYFNIHTNASPDNKNPRLG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1423 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 ProSitePatterns MADS-box domain signature. 12 66 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 Coils Coil 130 186 - -
Mibi07g1423 227 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 FunFam agamous-like MADS-box protein AGL11 22 105 - -
Mibi07g1423 227 ProSiteProfiles K-box domain profile. 96 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi07g1423 227 SUPERFAMILY SRF-like 11 84 IPR036879 GO:0003677|GO:0046983
Mibi07g1423 227 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Mibi07g1423 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 10 172 - -
Mibi07g1423 227 CDD MADS_MEF2_like 11 87 IPR033896 GO:0000977|GO:0045944
Mibi07g1423 227 Pfam K-box region 95 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi07g1423 227 Gene3D - 22 105 IPR036879 GO:0003677|GO:0046983
Mibi07g1423 227 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1423 Mibi-ChrMibi07 23416577 23427531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1423 10 211 MADS-box Gene Family AT4G09960 76.733 1.65e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi07g1423 K-box 2.8e-26 No_clan