LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi07g1358	ATGGGTTGCAGCAACAACAACAACAATGGAAGGGAGAACGATGTCATCAAGTACAAGGGAGTCCGGCGACGTAAATGGGGCAAATGGGTATCGGAGATTCGTGTTCCGGGCTCGAAAGAGAGGTTATGGCTCGGCACTTATGGGTCGCCGGAGGCAGCTGCGGTGGCGCATGACGTGGCATTCTATTGCCTGAGGAGGCCGGCCACATTGGAGAAGCTAAACCTGCCGGAGATGTTGCCGGCTTATTGTCACGAATGGCGGCACCGGGAGATGTCGCCGGGGTCGGTGCAGGAGGCGGCGTCGAACGCCGGGATGGCGGTGGATGCCAAGAGGATTGTGGAAGAAGAGACAGAGAAGAATGAGAGGATTGATGAGGAAAACAGAGGAAACAGAGGAATGAATGATTATGATGATGGGATTTGGTGGGATTGGGATGGTGATGATGGTAGCGGCGGAAGTGGCGGCGATGACGGCGGTTTATGGCCAGGAAGCTGCGGAGGAGATTCGAGCATTTCAGTTGATGATTATTTTGTGGATGTTCAACATTATTAA	552	0.5344	MGCSNNNNNGRENDVIKYKGVRRRKWGKWVSEIRVPGSKERLWLGTYGSPEAAAVAHDVAFYCLRRPATLEKLNLPEMLPAYCHEWRHREMSPGSVQEAASNAGMAVDAKRIVEEETEKNERIDEENRGNRGMNDYDDGIWWDWDGDDGSGGSGGDDGGLWPGSCGGDSSISVDDYFVDVQHY	183

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi07g1358	183	Gene3D	AP2/ERF domain	16	77	IPR036955	GO:0003700\|GO:0006355
	Mibi07g1358	183	Coils	Coil	106	126	-	-
	Mibi07g1358	183	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	15	119	-	-
	Mibi07g1358	183	Pfam	AP2 domain	17	66	IPR001471	GO:0003700\|GO:0006355
	Mibi07g1358	183	CDD	AP2	17	77	IPR001471	GO:0003700\|GO:0006355
	Mibi07g1358	183	ProSiteProfiles	AP2/ERF domain profile.	17	76	IPR001471	GO:0003700\|GO:0006355
	Mibi07g1358	183	SMART	rav1_2	17	82	IPR001471	GO:0003700\|GO:0006355
	Mibi07g1358	183	MobiDBLite	consensus disorder prediction	144	165	-	-
	Mibi07g1358	183	PRINTS	Ethylene responsive element binding protein signature	18	29	IPR001471	GO:0003700\|GO:0006355
	Mibi07g1358	183	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi07g1358	Mibi-ChrMibi07	22233239	22233790	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi07g1358	12	109	AP2-EREBP Transcription Factor Family	AT1G71520	61.000	4.52e-39	129

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi07g1358		AP2	4.3e-12	CL0081

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