Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1300 ATGAAGAGCTCAAACAATAAAACAAGAAAAGCAGCTAATAAAGTTTCTGAATGTGGAAGAGAAAAAGAAACAAAAGGAGAGGAAGATATATTGAGCAAACTGAGGAAAATGGATTTGGAAGAGCAAGAATGGGTCAATAAGATTCCTGGGTGTCCAGTGTTCTTCCCATCAGAACAGGAGTTCGAGGATCCTTTGGTTTATCTGCAGAAGATTTATCCTGAGGCTCAAAAATATGGAATATGCAAAATTGTGTCTCCTCTTAATGCCTCTATTCCAGCTGCTGTAGTTTTAATGAAAGAGATAGTAAATTTCAAGTTTGAAACTATCGTACAACCTCTTGGGTTTTCTGAGTTGAATGAGGATAATAAATTAATCTATTCTCTCAGAGGCAGAAAATACAGTTATCGCGATTTCGAGACTTTGGCAAACAAGGAATTTCTCCGTCGGTTTTGCAGTTCAGGAAGTCTTCCTTCTTCATATGTGGAAAAGTTATTCTGGCATGAGATGGAGCATGAAGAGATGGGAACAGTTGAGTATGGAGTTAATGTTGAAGGTAGTGCTTTTTCATGTGATCCTGATGACAAGCTTGGAAAAAGCAAATGGAATCTGAAGAGCTTCTCAAGGCTGCAGAAGTCTACATTGCGGTTCATTGATAGAGAGATTCCAGGAATAACTGACCCTATGCTTTATATTGGAATGATATTCAGCATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATTAACTATCATCATTCAGGAGCAAATAAAACTTGGTATGGCGTTCCCAGCGAAGCAGCCTCTTGGTTTGAAGAGGTTGCCTTAGATCGTGTGTTCCGCAATAAGATTTTATTAAAAAATGATGATGGAGAGGCCGATGCTTTCCAAGCTCTTGCTCATAAAACAACCATGTTTTCTCCAAATGTCTTGCTCCAACATGGTGTGCCAGTTTACAGAGTTGTGCAGAAGCCTGGAGAGTTTGTCATCACCTTTCCTAAATCATATCATGCCGGATTCAGTCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCTGTGAGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGGCGTTATGCACATTTGGGAATGATGCCTATTATCCCCTTTGAGGAACTTCTTTGCAATGAGGCATTGCTAATTTACAAGGCTGCCCCAGATCATCTCAAAGGCTCCAGTAACAACATACTCAATTTGGAATCCAACCACGCTACCAAGCTATCTTTTATGCAGCTCATGAGATTCTACGATGAAGCCCTTTCAAAACTGCAAAAAGGTTCAAAAGAGTACTGTTCAAGTTCTTCAAATTCTCTAGGCACTGTGGTATGCAGCCTCTGCTGTAGAGACTGTTATGTGGCTTTCTTGCTTTGCAAGCAATGCTATTCTCATCCCATTTGTATTTTCCATGATGAAACTGAGACTCGGACTTGTTCTTGCGGGAGGCAATGTACACTTTTCAAGAGAGATGAAATGTTGGCACTGAGGGATGCTGCCACAAGTTTTGAATTGGAAAAAGACATTTTGTTGGAAGTTCAAAGACATAGTGGAGCAAATATACTGTCAAAGAGATTCTTTTATACTGATTGGGAAAGCATTCAAGATGATAAGAACAATCATTGCCATGAAGAAAGAATAACCAGTGGAACTGTTTCATCTGTAATGGAGAGAGCATCAAGTTCAAAAAACAGAGAAAAGGACTTTATTAATGAGCTCAAATTGGAAGATAATAAGAAGATAGTGCTGAAAATTTGTAGAAAGAGAGGGCCTCCAACAATGATAGATGATGAGAAGGAAGCCCAAGTGAAGTCTAAATTACAGAAGAATGCTTCAAATTTGACTCTAACTTCTCCAACCGAATCTTGCTTAGCTTGA 1902 0.3933 MKSSNNKTRKAANKVSECGREKETKGEEDILSKLRKMDLEEQEWVNKIPGCPVFFPSEQEFEDPLVYLQKIYPEAQKYGICKIVSPLNASIPAAVVLMKEIVNFKFETIVQPLGFSELNEDNKLIYSLRGRKYSYRDFETLANKEFLRRFCSSGSLPSSYVEKLFWHEMEHEEMGTVEYGVNVEGSAFSCDPDDKLGKSKWNLKSFSRLQKSTLRFIDREIPGITDPMLYIGMIFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSEAASWFEEVALDRVFRNKILLKNDDGEADAFQALAHKTTMFSPNVLLQHGVPVYRVVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAVSDWFPLGAEATRRYAHLGMMPIIPFEELLCNEALLIYKAAPDHLKGSSNNILNLESNHATKLSFMQLMRFYDEALSKLQKGSKEYCSSSSNSLGTVVCSLCCRDCYVAFLLCKQCYSHPICIFHDETETRTCSCGRQCTLFKRDEMLALRDAATSFELEKDILLEVQRHSGANILSKRFFYTDWESIQDDKNNHCHEERITSGTVSSVMERASSSKNREKDFINELKLEDNKKIVLKICRKRGPPTMIDDEKEAQVKSKLQKNASNLTLTSPTESCLA 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1300 633 Pfam jmjN domain 52 84 IPR003349 -
Mibi07g1300 633 SMART cupin_9 195 370 IPR003347 -
Mibi07g1300 633 SUPERFAMILY Clavaminate synthase-like 141 394 - -
Mibi07g1300 633 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 552 - -
Mibi07g1300 633 SMART JmjN_1 50 91 IPR003349 -
Mibi07g1300 633 MobiDBLite consensus disorder prediction 1 27 - -
Mibi07g1300 633 ProSiteProfiles JmjC domain profile. 198 370 IPR003347 -
Mibi07g1300 633 Pfam JmjC domain, hydroxylase 228 353 IPR003347 -
Mibi07g1300 633 MobiDBLite consensus disorder prediction 13 27 - -
Mibi07g1300 633 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Mibi07g1300 633 Gene3D Cupin 51 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1300 Mibi-ChrMibi07 20671300 20675802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1300 48 518 JUMONJI Transcription Factor Family AT2G34880 31.860 3.79e-59 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mibi07g1300 JmjC 2.1e-41 CL0029