Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1250 ATGAGCAAAATAGAGCTGAAAATTTTACTCTCTCAATCTTTACGCTTTCTGAAATCCTCCACTAACCACTCCCTTTCATCCCACTTGTTCAAATTTCCTAATACCATTTCTCGATCCATTACCACTTCTTCGGAGGACAATCTTGAAGGCTTGGTTCATCCTGATGACACTTTTTTACATGATAGTTCTCTCCCTCCAACCGATTTAGCTGAAGAATACTCGTTTTTGCGCAATGGGTTGTTGGATTCGAGTGCCGAATGTGGTCCCTCGTCGCGAAAGGTTCGTTCTGGTGAGTTTTCTGATGAGGCTGTATTGATTTCTAATGCTATCAGGTGTCAAAGTGATGGTTTTGGTTATGAAACCCAGAAATTTCTTAGGCAGTTCCGTGGTAAATTGAACCAAACTTTAGTTGTAGAGGTGTTGAATCTTGTGAAGGACCATGACTTGTGTGTTAAGTTTTTCTTATGGGCGGGGCGTCAAATTGGTTATAGTCATACACTAGCAGTGTATGATGCTCTTTTGGATATACTGTGTTGTAATGATAGTGAGAGAGTTCAGGAGAAATTTTTAAGGGAAATAAAAGATGATGATAATGATGTGCTCCGGAAGTTGCTTGATATTCTGGTACGGAAGTGTTGCCGTAATGGGTTGTGGAATATGGCATTGGAAGAGCTAGGGAGACTGAAGGATTATGGGTACAAGCCATCACGGACAACTTATAATGCCTTGGTTCAAGTTTTCCTTAAAGCTGGAAAACTAGATACAGCTTATTTGGTTTACAAGGAGATGTTCAATTATGGATTTGATATGGATGGGTTTACTCTGAGTTGTTTTGCCTATTCCCTCTGCAAAGCAGGGAGGGTAAGGGATGCTCTGACATTGATAGAGAAGGAGGAATATGTTCCTGATACTGCTTTTTATAATAGGATGGTCTCTGGATTATGTGAAGCTTCGCATTTTGAAGAAGCTATGGATATCTTAAACAGAATGCGCTCTGACGGATGCATTCCTAATGTTGTGACTTATAGAAGTTTGCTTTCTGGTTGTTTGAAGAAAGGACAGCTGGGAAGATGCAAGAGAATTCTTAGTTTGATGATTACTGAGGGCTGTTATCCAAGTCGTGAAATATTTAATTGTTTAGTACATGTTTTTTGCAAATCAAGGGATTACTCTTATGCCTATAAGTTGTTTAAGAAAATGAATAAATGCGGGTGTCAGCCAGGCTATTTGGTTTATAATATATTGATTGGTGGTATATGTGGTAATGAAGAAGTGCCATCCTCAGATATGTTAGAATTGGCTGAAAAAGCTTACACTGAGATGCTTAATGCAGGGGTTGTTCTAAATAAGATCAATGTTAGCAACTTTGCACGGTGTCTATGTGGGGCTGGAAAATTTGACAAAGCTTTTAAGATTATCCGTGAAATGATGAGCAAGGGTTTCATTCCTGATGATAGTACATATTCCAAAGTGATTGGTTTCCTTTGTGTTGTCTCAAAGGTGGAGAAGGCATTTTTGTTGTTTGAAGAGATGAAAAGAAATGGTGTTGTTCCTAGTGTTTATACATATACAATTTTGATTGACAGCTTCTGCAAAGCTGGTCTTATTGAACAAGCTCGCAAATGGTTAGATGAAATGGTGAGAAATGGTTGCACTCCTAATGTGGTGACTTATACTGCTCTTATTCATGCATACCTGAAAGCCAGAAAGGTGTCTAATGCAAATGAACTGTTTGAGATGATGTTGGCAGAAGGATGCAAGCCCAATGTTATTACATATACAGCTTTAATTGATGGCCTTTGTAAAGCTGGGCAGATTGAAAAAGCATGCCAAGTCTACGCCAGAATGAGAGGCAACATAGAAACTTCAGATATGGACATTTATTTTAGGTCAAATGACAACAGCTGTGAAAAACCAAATGTCATTACATGTGGGGCATTGGTGGATGGTCTATGTAAAGCAAAACGGGTCAAAGAGGCCCATGAACTGTTGAATTCTATGTCTGTTGAGGGTTGTGAGCCTAACTATATAGTGTATGATGCTCTTATAGATGGCTTTTGCAAGGCTGGAAAGCTAGAGGACGCCCAAGAGGTGTTTGCCAAGATGTCAGAGCGTGGATATAGCCCAAATTTGTATACCTATGGCTCCTTAATTGATGTGCTGTTTAAAGATAAAAGGTTGGATCTTGTTTTGAAGGTCTTGTCCAAGATGCTAGAGAATTCTTGTGTTCCCAATGTTGTTATTTACACAGAGATGATAGACGGTCTCTGCAAAGTTGGAAAGACAGATGAGGCTTACAAGCTCTTACTTAAGATGCAGGAAAAGGGATGCAATCCAAATGTTGTAACATATACTGCAATGATTGATGGATTTGGGAAATTAGGTAAAATTGAAATGTGCCTTGAGCTATTGAGAGATATGTGCTCTAAGGGTTGTGCTCCAAACTTTATAACCTATAGGGTCTTGATAAATCATTGTTGTTCTGCTGGCCTTCTTGATGAGGCTCACAGACTTTTAGATGAAATGAATCAAACTTATTGGCCAAAACATATCTCTAGCTATCGTAAAATTGTGGATGGTTTTAGCAGAGAATTTATAACTTCTATGGGGCTTTTAAATGAGTTGGCTGAGAATGAGTCAGTTCCTATGCTTCCCATTTACAGAGTTTTAATTGATAATTTTGTCAAAGCTGATAGACTAGAGGCTGCTTTAAAGTTACTAGAAGAAGTTCCCTTGTCTTCAAGTTTTGAAGATGGCAATAAACATTTATATGCCTCATTGATTGAGAGTCTATCACATGCAAGTAAGGTTGATAAAGCATTTGAGCTATATGCAACCATGGTAAGCAAGAGTATCATTCCGGAGCTTAGCACATTTGTTCATCTCATTAAAGGTCTCACTAAGGTTGATAGGTGGCAAGAAGCACTTGAATTAACAGACAGTATATGTCGAATGGACATTCGTTGGCTTTTCAAAGATATGTCCAATCAACATGAAACATCTGTTGCTCAGATTCATGGTGGAGGCTTTGTTGAACCAGTGTGCCATGAGATATTGATCCTGTATGCTTTTCTTGCATTTTTATTCAGTACTATGGTATACAGGGAAGTAACTCTTGCTCTTAGAACTGGTCTCCAAGATGCTTTTGCTGAGTTCTCATTTCTTCGGGTCGTTGGACCCCATTCTATTCTCAAGTTCCTTCGTCAGAACTTCAAGGCATTGATTCCAGTGCTCTTTCAACACTCTTTAAAAGAGGCAGGGGATGATTACTATGATGATAAGGTGGCAAATTTGAATCATATATTTGGTGGGGAACCAATGAAGATAACAAGTCCATCAACTGATGCTGAAGTTGCATTGGCACTTCGAGTATTGGAAGGTTGA 3384 0.3889 MSKIELKILLSQSLRFLKSSTNHSLSSHLFKFPNTISRSITTSSEDNLEGLVHPDDTFLHDSSLPPTDLAEEYSFLRNGLLDSSAECGPSSRKVRSGEFSDEAVLISNAIRCQSDGFGYETQKFLRQFRGKLNQTLVVEVLNLVKDHDLCVKFFLWAGRQIGYSHTLAVYDALLDILCCNDSERVQEKFLREIKDDDNDVLRKLLDILVRKCCRNGLWNMALEELGRLKDYGYKPSRTTYNALVQVFLKAGKLDTAYLVYKEMFNYGFDMDGFTLSCFAYSLCKAGRVRDALTLIEKEEYVPDTAFYNRMVSGLCEASHFEEAMDILNRMRSDGCIPNVVTYRSLLSGCLKKGQLGRCKRILSLMITEGCYPSREIFNCLVHVFCKSRDYSYAYKLFKKMNKCGCQPGYLVYNILIGGICGNEEVPSSDMLELAEKAYTEMLNAGVVLNKINVSNFARCLCGAGKFDKAFKIIREMMSKGFIPDDSTYSKVIGFLCVVSKVEKAFLLFEEMKRNGVVPSVYTYTILIDSFCKAGLIEQARKWLDEMVRNGCTPNVVTYTALIHAYLKARKVSNANELFEMMLAEGCKPNVITYTALIDGLCKAGQIEKACQVYARMRGNIETSDMDIYFRSNDNSCEKPNVITCGALVDGLCKAKRVKEAHELLNSMSVEGCEPNYIVYDALIDGFCKAGKLEDAQEVFAKMSERGYSPNLYTYGSLIDVLFKDKRLDLVLKVLSKMLENSCVPNVVIYTEMIDGLCKVGKTDEAYKLLLKMQEKGCNPNVVTYTAMIDGFGKLGKIEMCLELLRDMCSKGCAPNFITYRVLINHCCSAGLLDEAHRLLDEMNQTYWPKHISSYRKIVDGFSREFITSMGLLNELAENESVPMLPIYRVLIDNFVKADRLEAALKLLEEVPLSSSFEDGNKHLYASLIESLSHASKVDKAFELYATMVSKSIIPELSTFVHLIKGLTKVDRWQEALELTDSICRMDIRWLFKDMSNQHETSVAQIHGGGFVEPVCHEILILYAFLAFLFSTMVYREVTLALRTGLQDAFAEFSFLRVVGPHSILKFLRQNFKALIPVLFQHSLKEAGDDYYDDKVANLNHIFGGEPMKITSPSTDAEVALALRVLEG 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 458 484 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 487 520 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 556 590 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 307 339 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 376 407 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 782 815 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 817 842 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 642 675 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 521 555 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 239 271 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 678 710 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 712 746 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 591 617 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 747 781 IPR002885 -
Mibi07g1250 1127 TIGRFAM PPR: pentatricopeptide repeat domain 923 954 IPR002885 -
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 297 387 IPR011990 GO:0005515
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 630 726 IPR011990 GO:0005515
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 388 497 IPR011990 GO:0005515
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 745 779 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 710 744 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 920 954 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 780 814 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Mibi07g1250 1127 SUPERFAMILY HCP-like 676 812 - -
Mibi07g1250 1127 SUPERFAMILY HCP-like 384 615 - -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 815 849 IPR002885 -
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 102 296 IPR011990 GO:0005515
Mibi07g1250 1127 Pfam PPR repeat 810 842 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 638 668 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 640 674 IPR002885 -
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 727 866 IPR011990 GO:0005515
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 498 629 IPR011990 GO:0005515
Mibi07g1250 1127 Gene3D Tetratricopeptide repeat domain 867 1014 IPR011990 GO:0005515
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 619 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 958 985 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 239 268 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 887 909 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 458 481 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat 924 951 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Mibi07g1250 1127 PANTHER ATPASE EXPRESSION PROTEIN 3 854 987 - -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 553 602 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 674 722 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 744 792 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 302 350 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 376 420 IPR002885 -
Mibi07g1250 1127 Pfam PPR repeat family 491 532 IPR002885 -
Mibi07g1250 1127 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1250 Mibi-ChrMibi07 19467989 19474332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1250 430 984 Glycosyltransferase AT1G05670 28.957 4.41e-72 253