LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi07g1177	ATGAGTAAGTCTTTGCTTTTAGGCTTTTACATCACAGTTTCCTGCATTGCTTTTGTCATTTCCAAGATCATTATTTCTGTCCTCCTCTACAAAAGATGGAAAAGAAAGCACTCGATTCACGAAGAAGGCTATGCAGGTGGGAAGATGGTGATATTTAGGTCTTCAATTCTGCAATCCCTCGAATCTGATACCATGCTGAAGAAGATAATGAGCCTGAATAATATGGAGGTGATTGGATGTGGTGGTTATGGGACAGTTTATAAACTGAAAATAGATGACTCAAAATCTTTTGCAGTGAAAAGACTGAACAGAGGAACTGCAGATAAAGGATTTGAGAGAGAGCTGGAAGCAATGGCAGACATAAAACACCGCAATATTGTAACCCTTCATGGATATCATACTGCTCCACATTACAACCTCCTCATATATGAGTTGATGCCTAATGGAAGTTTGGATAATTTCCTCCACAGAAGACCAGAGCAGAAGAAAACCTTAAATTGGTCATCAAGATACAGAATAGCTATAGGTGCTGCTAGAGGAATATCTTATCTTCACAATGATTGCATCCCTCACATAATCCACAGAGATATCAAGTCGAGCAATATATTGCTGGACGAAAACATGGAGGCTAGAGTTTCGGATTTCGGATTAGCCACGTTGATGGAACCAGACAAAACCCATGTTTCCACAATTGTGGCTGGAACTTTTGGATACTTAGCTCCTGAATATTTTGATACAGGAAGAGCAACATTCAAGGGGGATGTCTACAGCTACGGAGTTGTACTACTGGAGCTTTTAACTGGGAGAAAACCCAGTGATGAAACGTTTGCGGAAGAAGGAACAAAGCTTGTCACATGGGTGAAGGCTGTTGTTCAGGAAAAGAAGGAGGAACTAGTTCTTGATGATAGGCTAGGGACCTGTCCAATGCAAGAAGTTAACAATGTATTCAATATTGCTATGATGTGTCTTGAATCTGATCCCTCGAAGAGACCATCAATGGCAGAAGTTGTCAACTTGCTTGAGCAAACGAAGCTGGACAAATTTGCTACAGCTTCCTAG	1059	0.4079	MSKSLLLGFYITVSCIAFVISKIIISVLLYKRWKRKHSIHEEGYAGGKMVIFRSSILQSLESDTMLKKIMSLNNMEVIGCGGYGTVYKLKIDDSKSFAVKRLNRGTADKGFERELEAMADIKHRNIVTLHGYHTAPHYNLLIYELMPNGSLDNFLHRRPEQKKTLNWSSRYRIAIGAARGISYLHNDCIPHIIHRDIKSSNILLDENMEARVSDFGLATLMEPDKTHVSTIVAGTFGYLAPEYFDTGRATFKGDVYSYGVVLLELLTGRKPSDETFAEEGTKLVTWVKAVVQEKKEELVLDDRLGTCPMQEVNNVFNIAMMCLESDPSKRPSMAEVVNLLEQTKLDKFATAS	352

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi07g1177	352	ProSitePatterns	Protein kinases ATP-binding region signature.	78	100	IPR017441	GO:0005524
	Mibi07g1177	352	SMART	serkin_6	72	349	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi07g1177	352	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	12	344	-	-
	Mibi07g1177	352	SUPERFAMILY	Protein kinase-like (PK-like)	71	343	IPR011009	-
	Mibi07g1177	352	ProSiteProfiles	Protein kinase domain profile.	72	345	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi07g1177	352	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	15	-	-
	Mibi07g1177	352	FunFam	LRR receptor-like serine/threonine-protein kinase IOS1	146	351	-	-
	Mibi07g1177	352	FunFam	Receptor-like serine/threonine-protein kinase	43	145	-	-
	Mibi07g1177	352	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	192	204	IPR008271	GO:0004672\|GO:0006468
	Mibi07g1177	352	Pfam	Protein kinase domain	74	338	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi07g1177	352	Gene3D	Phosphorylase Kinase; domain 1	51	145	-	-
	Mibi07g1177	352	Gene3D	Transferase(Phosphotransferase) domain 1	146	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi07g1177	Mibi-ChrMibi07	17438380	17441010	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi07g1177	3	342	Receptor kinase-like Gene Family	AT2G35620	47.536	9.53e-103	312

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XIIIa	Mibi07g1177		Pkinase	5.4e-50	CL0016