Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1158 ATGGATCCCAATTTTCATGGCTTGCCTCCCCTCAAGAGACTCAGATTAATGCAACAGCAACAAGAGCTTCAGAATCAACACAATCACAAAACCCACCATGAAGTCTCCGCCTTTTCCTCCTCAACTTTACCCACAAAGAAGCGTAAGGAATCTCGATTTTCAACATTGTTTTTTGATTCGCCGCCATTCTCAGTTCCTCTCAACGCTTATTCATTACCAGCCAAGAAAAGGGTATGGGCTCTTCAACCTGATTTTTCTTCCCATGTTGGTGTTTCCTCTTTTGACCTCAATGTTGAATACAAACCATCAATTGAAGAAGAAGAAGGAGAAGTAAAACCAGTAGATGATGATAAACCCAATAATACTGACCATGTTGAAAATGGAAACAAAATTGGAATTGAAATTGAAAATATTGAAGATGTTGATGATGTTGTTGTTGATGATGATGAAGATGGGATTGTGTGTGATGTATGTAAAAGTACAGATGGGGATCCATCTGATCCAATTGTTCTCTGTGATGGGTGTGATTTAATGGTTCACGCTTCATGTTATGGTAACCCACTTGTGAAAGGAATACCAGAAGGTGATTGGTTTTGTGAAAAATGTAAACTTTCATTGTCTGAAAATGAGAACAAGACCATTTCTTGTTGCCTGTGTCCTACAAAGGAAGGGGCTATGAAGCCAACTGTAGATGGAAGGTGGGCCCATATTGTTTGTGGGCTTTTGGTTCCTGAGGTGTTCTTTAAGGATCCAGAAGGGAGAGAAGGGATTGATTGTTCAAAGGTTCCTGAGAAGAGGTGGTCTGAGAAGTGTTATATTTGTGAGTCTTCTTCAAGTGGATGTGCTATTGTGTGTTCTGAGGTTAAGTGTCCTTTGGCATTTCATGTCACTTGTGGGTTGAAAGAGGATCTCAGCATTGAGTATCGTGAAGGGAAGAAGAATGCTACTATTGTTGCTGGTTTCTGCAAAAGTCACACTGAATTATGGAAAAAGCAACAGCTATCAGGGAAGTACAGAATCGTTGCTGAAGAAAACAAGTAA 1041 0.4006 MDPNFHGLPPLKRLRLMQQQQELQNQHNHKTHHEVSAFSSSTLPTKKRKESRFSTLFFDSPPFSVPLNAYSLPAKKRVWALQPDFSSHVGVSSFDLNVEYKPSIEEEEGEVKPVDDDKPNNTDHVENGNKIGIEIENIEDVDDVVVDDDEDGIVCDVCKSTDGDPSDPIVLCDGCDLMVHASCYGNPLVKGIPEGDWFCEKCKLSLSENENKTISCCLCPTKEGAMKPTVDGRWAHIVCGLLVPEVFFKDPEGREGIDCSKVPEKRWSEKCYICESSSSGCAIVCSEVKCPLAFHVTCGLKEDLSIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEENK 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1158 346 PANTHER PHD FINGER PROTEINS 75 326 - -
Mibi07g1158 346 ProSiteProfiles Extended PHD (ePHD) domain profile. 213 326 IPR034732 -
Mibi07g1158 346 Pfam PHD-zinc-finger like domain 215 325 - -
Mibi07g1158 346 MobiDBLite consensus disorder prediction 105 127 - -
Mibi07g1158 346 CDD PHD_BRPF_JADE_like 154 202 - -
Mibi07g1158 346 ProSiteProfiles Zinc finger PHD-type profile. 152 205 IPR019787 -
Mibi07g1158 346 SMART PHD_3 154 203 IPR001965 -
Mibi07g1158 346 SMART PHD_3 270 326 IPR001965 -
Mibi07g1158 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 206 IPR013083 -
Mibi07g1158 346 SUPERFAMILY FYVE/PHD zinc finger 135 204 IPR011011 -
Mibi07g1158 346 Pfam PHD-finger 154 203 IPR019787 -
Mibi07g1158 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 328 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1158 Mibi-ChrMibi07 17156676 17158247 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1158 1 344 C2H2 Transcription Factor Family AT3G14740 55.337 9.96e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi07g1158 zf-HC5HC2H_2 4e-28 CL0390