Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1103 ATGAGAACCATTTTTCGTTCCCGCAATTTCTGCAGATCCTTCAAGGAAGTTAGGGTCATCGACGAAGATGACGGGACCGTACGGAAAATTGGCGGCGGCGGCGCCGATTCCGACGACGGCGGTTACGGCCGTTCATGGTCAACTATGTTGCCGGAGCTTCTCGGCGAGATCATTCGCCGTGTCGAATCAACCGATGACACGTGGCCTAACCGTCAAAACGTCGTCGCTTGTGCCTGTGTGTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTTAGGTCTCCTAAGTGTAATAGTGGCAGGATTACTTTTCCTTCTTGCCTTAAGCAGCCAGGACCACGGGACTTGCCCCACCAGTGTATTATAAAGAGGAATAAGAAGACTTCAACATTTCACCTATATCTTGCCCTTACTCCACCATCATTCACAGATACAGGTAAGTTTCTATTGGCAGCTAAGAGATATAGGCGTGGTCCTGGTATTGAATATGTACTTTCACTTGATGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGCTCAGATTTTCTTGGCACCAACTTCACAATCTATGATAGCCAACCACCCCATTGTGGTGCAAGGCCTTCAAATGGCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGTGGGGCAAGTATCGTACAAGTTCAACCTTTTGAAGTCAAGAGGGCCAAGGAGGATGGTTTGCTTAATGAAGTTCCCAAACCAATCGTCAGGAGAAAGTTCAGATAGCAGATCTCTGGATGTTCACAAGAAGAACAATACAGAACAAGCTGCCTTGGAATACTCAATCTTGAAAAACAAATCTCCGAGGTGGCATGAGCATTTGCAATGTTGGTGTTTAAATTTCCATGGTCGTGTGACTGTAGCATCGGTGAAGAACTTTCAGCTGGTCGCTACAGTGGACCAAAGCCAACCAGAAGGGAAAGGAGATGAGGAAACGGTTCTTCTTCAATTTGGGAAAGTAGGGGATGATTCTTTCACTATGGATTACAGGAAGCCCCTATCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1134 0.4665 MRTIFRSRNFCRSFKEVRVIDEDDGTVRKIGGGGADSDDGGYGRSWSTMLPELLGEIIRRVESTDDTWPNRQNVVACACVCKRWRDITKEIVRSPKCNSGRITFPSCLKQPGPRDLPHQCIIKRNKKTSTFHLYLALTPPSFTDTGKFLLAAKRYRRGPGIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTIYDSQPPHCGARPSNGKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCLMKFPNQSSGESSDSRSLDVHKKNNTEQAALEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPEGKGDEETVLLQFGKVGDDSFTMDYRKPLSAFQAFAICLTSFGTKLACE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1103 377 PRINTS Tubby superfamily signature 179 203 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 163 179 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 228 255 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Mibi07g1103 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Mibi07g1103 377 PANTHER TUBBY-RELATED 42 375 - -
Mibi07g1103 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Mibi07g1103 377 Pfam F-box domain 51 93 IPR001810 GO:0005515
Mibi07g1103 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Mibi07g1103 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
Mibi07g1103 377 Gene3D - 41 94 - -
Mibi07g1103 377 Gene3D Tubby Protein; Chain A 103 377 IPR025659 -
Mibi07g1103 377 Pfam Tub family 108 372 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1103 Mibi-ChrMibi07 15369950 15373310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1103 45 377 TUB Transcription Factor Family AT1G53320 77.419 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi07g1103 Tub 6.9e-101 CL0395