Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1084 ATGTCGCATTCTGGGAAGCCAATTTCCGAGCTAGGACTCGATTCTCTTAACAACCAATTCCACAACTCTCTAAACTATGAATCTAACAAGCCAGATTTCCGAGAACTCGACTTAGGCTCACCAGTTTCACCATTACGAACTCGTCACACTGTACCCAGTGGACTCACTACTACCAGTAGTAGCTCAAGCTCATCTGGATCCATCTCTGGGAAAAACGGTTACAAACCGGTATCGAAAAGATCCGATTTTGATCCGAATAACCACTCCGGCGAGCTCTCCGGCTCCGATTCGAAGGCCAATCAGCCATTAATTTACTCCGGCCAAAGCTCCTCCGCCGTGAATTCGCCGCCGCCGACTGCGACGGCGAGTTTCCTCCCCACGGGGAACATCTGCCCCTCCGGCAAGATTCCGAAGACGGTCGCCGCGGCCGGTCGGAGCTCGAGGACCGATGTTTTGGGCTCCGGGATTGGGTATTACGGCCATGGGAGCATAATTCGGGGCAATGCCGGCGTCGGAGCGGCGGCGAGGGCTGGCGGTGGTGGCGGTGGCGGTGCCGGAGGGGCGGAGTCGGCGAGGCGGGCCGGGGCGGTGAGTGTGGACCCGGAGGAGGTGAAGAGGGCTGGGAATGAGCAGTATAAGAGGGGTCATTTTGCTGAGGCTTTGAATTTGTATGATAGGGCAATTGCGTTATCACCTGTGAATGCTGCCTACCGGAGTAACCGTGCGGCTGCATTGACAGGTTTGGGACGGTTGGGTGAGGCAGTTAGGGAGTGTGAGGAGGCTGTGAGGTTGGATCCTAATTATGGGAGGGCACATCACCGTTTGGCCTCTCTTTTTCTAAGGTTAGGACAAATTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGCCACCTGATCCTTCTGAGTTGCAGAAGTTGCAATTAGTGGAGAAGCACCTCGGAAAATGTACAGACTCACGGAAGATAGGTGATTGGAAAAGTGTTCTCAGGGAAATTGATGCTGCCATTTCTTCTGGAGCAGACTCTTCTCCTGAGCTCTCCATGGGTAGAGCAGAAGCCTTTTTGAAACTCCACCAAGTTGATGATGCTGAATCAAGTCTGTTAAACAATCCCAAATTAGAACCACATACTAACTCCTCTTCACAAGCAAAATTTTTTGGAATCCTTTCTGAAGCTTATTCCTTCTTTGTGAGAGCTCAGATTGAGATGGCTCTAGGAAGATTCGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGATTCCCGAAACATTGAAGTTACTGTTTTGCTAAAAAATGTAAGGATGGTGGCAAGAGCTCGAGCGCATGGCAATGATCTTTTCAAATCCGAAAGGTTCACTGAAGCATGCTCGGCATATGGGGAAGGTTTGAGGTTGGATCCTTCTAACTCAGTTCTTTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACAATCAATTGAGGATTGCAATCAGGCTTTACATTTCCAACCTAATTACACAAAAGCTCTTCTTCGTAGGGCTGCATCTAATAGCAAGGTAGAAAGGTGGGCAGAAGCTGTCAAAGATTATGAGATCTTGCGGAGAGATCTTCCAGATGACAGTGAAGTAGCTGAAGCTCTGTTTCATGCAGTAGTGGCATTAAAGAAATCTCGTGGAGAGGAAGTGCATGATTTAAAATTTGGTGGTGAGGTGGAAGAAGTGTCAGGTCTAGAGCAATTTAGAGCTGCAATAGCATTACCAGGCGTTTCTGTGGTGCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATGTCACCATTTATGGGCACATTATGTGGCCGCTATCCTTCTATAAACTTCCTCAAGGTGGATATTCAAGAATGCCCTACAGTTGCAACGGCTGAGAGTGTTAGAATCGTGCCAACATTCAAGATCTACAAGAATGGTTGTCGAGTGAAGGAAATTGTGTGCCCTAGTCGCGACATGCTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2022 0.4866 MSHSGKPISELGLDSLNNQFHNSLNYESNKPDFRELDLGSPVSPLRTRHTVPSGLTTTSSSSSSSGSISGKNGYKPVSKRSDFDPNNHSGELSGSDSKANQPLIYSGQSSSAVNSPPPTATASFLPTGNICPSGKIPKTVAAAGRSSRTDVLGSGIGYYGHGSIIRGNAGVGAAARAGGGGGGGAGGAESARRAGAVSVDPEEVKRAGNEQYKRGHFAEALNLYDRAIALSPVNAAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHHRLASLFLRLGQIENARKHLFCPGLPPDPSELQKLQLVEKHLGKCTDSRKIGDWKSVLREIDAAISSGADSSPELSMGRAEAFLKLHQVDDAESSLLNNPKLEPHTNSSSQAKFFGILSEAYSFFVRAQIEMALGRFENAVTAAEKASQIDSRNIEVTVLLKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEQSIEDCNQALHFQPNYTKALLRRAASNSKVERWAEAVKDYEILRRDLPDDSEVAEALFHAVVALKKSRGEEVHDLKFGGEVEEVSGLEQFRAAIALPGVSVVHFEIASNPQCKQMSPFMGTLCGRYPSINFLKVDIQECPTVATAESVRIVPTFKIYKNGCRVKEIVCPSRDMLEHSVRHYSF 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1084 673 Pfam Tetratricopeptide repeat 395 424 IPR019734 GO:0005515
Mibi07g1084 673 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Mibi07g1084 673 Pfam Tetratricopeptide repeat 475 506 IPR001440 GO:0005515
Mibi07g1084 673 Gene3D Tetratricopeptide repeat domain 199 557 IPR011990 GO:0005515
Mibi07g1084 673 CDD TRX_family 578 665 - -
Mibi07g1084 673 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 670 IPR044534 -
Mibi07g1084 673 FunFam TPR repeat-containing thioredoxin TTL4 565 672 - -
Mibi07g1084 673 Pfam Thioredoxin 579 663 IPR013766 -
Mibi07g1084 673 Gene3D Glutaredoxin 558 671 - -
Mibi07g1084 673 MobiDBLite consensus disorder prediction 20 128 - -
Mibi07g1084 673 SUPERFAMILY TPR-like 202 292 IPR011990 GO:0005515
Mibi07g1084 673 SMART tpr_5 201 234 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 235 268 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 442 472 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 507 540 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 345 378 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 393 426 IPR019734 GO:0005515
Mibi07g1084 673 SMART tpr_5 473 506 IPR019734 GO:0005515
Mibi07g1084 673 MobiDBLite consensus disorder prediction 46 74 - -
Mibi07g1084 673 SUPERFAMILY Thioredoxin-like 476 671 IPR036249 -
Mibi07g1084 673 MobiDBLite consensus disorder prediction 87 128 - -
Mibi07g1084 673 Pfam Tetratricopeptide repeat 207 267 - -
Mibi07g1084 673 SUPERFAMILY TPR-like 345 531 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1084 Mibi-ChrMibi07 15050159 15053690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1084 438 583 U-box Gene Family AT3G07370 28.415 1.80e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0717 01 6864512 6867662 Mibi07g1084 07 15050159 15053690 CCT
Mibi07g1084 07 15050159 15053690 Mibi01g0517 01 4857416 4860395 CCT
Mibi07g1084 07 15050159 15053690 Mibi07g1084 07 15050159 15053690 ECH