Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1078 ATGGATCTCACCAAGAAGCGAAAGCTCGATGACAACGGCATCATCCCAACAGATTCCAACCAAACCCTAACTCCCTCCGACGCTCGCAAAATCATTGAACGATTCAGCCCCGAACAGCTCATCGACGTTCTCCAAGAAGCCGTCGTACGTCACGCCGACGTACTCGACGCCGTAAGGTCCGTCGCCGACCATGACGTCACCCAACGTAAGCTCTTCATCCGTGGCCTTGGCTGGGAGACAACAACCGACGGCCTCCGCTCTCTGTTCTCCGCATACGGCGAGCTCGAAGAAGCCATCGTTATCCTCGATAAGGCCACAGGTAAATCTAAGGGTTACGGTTTTGTTACTTTCAAGCATGTTGATGGTGCTTTGCTTGCTTTGAAAGAACCGAGTAAGAGGATAGATGGTAGGGTCACCGTGACACAGCTCGCGGCGGCCGGTAACACGGGATCGAATACGAATTCCGCCGATATAGCAATGAGGAAGATTTATGTTGCGAATGTGCCGTCGGATTTACCGGCGGATAAACTGTTGGCTCACTTCTCGCTTTATGGGGAGATTGAGGAGGGGCCGTTAGGGTTTGATAAGCAGACCGGGAAGTCGAAGGGGTTCGCGCTTTTCGTGTATAAGACGGCGGAGGGGGCGCAGGCGGCGCTGGTGGATCCGGTGAAGATGGTTGAGGGGAGGCAGCTGAATTGTAAGTTGGCTATAGCCGATGGGAAGCAAGGGAAGCGAGGCGGTTCGGGTTCGGGGACGATGGGACCGGATGGAATTCAAGGTTTAGGGAATGCTCATGGTGATGGAATGGGTTTGGCTCCGCCGTCTTCGATGCCGGGTTCGCTTTCCGGTCAGTATGGTGGACCTGTTGGAATGGGATCATATGGGGGTTTTGGGGGTCAGCCTCCATTGGGGAATCATCCACTGAATACGTCTGTAGGTGGAACAGGGTTGTCTTCGGCTGGTAATCAGGTTGCCTCTTCTCTTGGAGGTAGTGTGGTGGGTTGGGTGCTGGTGGTGGTTCTGGTGGTGGATTGGGGGGTGCTGGTTCTTTGTATAGATTGCCAGCTTCAGTAG 1074 0.5428 MDLTKKRKLDDNGIIPTDSNQTLTPSDARKIIERFSPEQLIDVLQEAVVRHADVLDAVRSVADHDVTQRKLFIRGLGWETTTDGLRSLFSAYGELEEAIVILDKATGKSKGYGFVTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNSADIAMRKIYVANVPSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTAEGAQAALVDPVKMVEGRQLNCKLAIADGKQGKRGGSGSGTMGPDGIQGLGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGGQPPLGNHPLNTSVGGTGLSSAGNQVASSLGGSVVGWVLVVVLVVDWGVLVLCIDCQLQ 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1078 357 CDD RRM_RBM24_RBM38_like 161 236 - -
Mibi07g1078 357 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Mibi07g1078 357 Gene3D - 46 149 IPR012677 -
Mibi07g1078 357 SMART rrm1_1 70 142 IPR000504 GO:0003723
Mibi07g1078 357 SMART rrm1_1 162 234 IPR000504 GO:0003723
Mibi07g1078 357 PANTHER GEO13361P1-RELATED 52 284 - -
Mibi07g1078 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Mibi07g1078 357 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Mibi07g1078 357 MobiDBLite consensus disorder prediction 1 20 - -
Mibi07g1078 357 SUPERFAMILY RNA-binding domain, RBD 155 268 IPR035979 GO:0003676
Mibi07g1078 357 Gene3D - 150 271 IPR012677 -
Mibi07g1078 357 SUPERFAMILY RNA-binding domain, RBD 63 146 IPR035979 GO:0003676
Mibi07g1078 357 MobiDBLite consensus disorder prediction 241 281 - -
Mibi07g1078 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Mibi07g1078 357 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Mibi07g1078 357 CDD RRM_RBM24_RBM38_like 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1078 Mibi-ChrMibi07 14975414 14976578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1078 157 245 C2H2 Transcription Factor Family AT2G19380 41.111 2.26e-11 63.2