Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1011 ATGGATTCAACACGCTTTGACTGTCATGGGGGCGTCTCAAGTAAGAAAAATTTGAAGTCAATTTCTTCACAAACAAGCGCAGCCGACAGCGACAACAATGGTTGCTTTGAGTGCAATATATGCTTGGAGTCAGCCCATGATCCTGTGGTCACTCTGTGTGGTCATCTCTACTGCTGGCCTTGCATATTCAGGTGGCTTCAAGTTCATAACTCTTCTGATGATGAATCAGACCGGCTGCATCCTACATGCCCAGTTTGTAAAGCTGATCTCTCTCATACTTCATTAGTCCCTCTTTATGGCCGAGGCGCACATAGTTCGGATTCTGAACTCAAGAAAACCCGGACGGATAGAAGCATACCCCGTAGACCGCCTCCTCACAGCTCGAACACTATGTTAAATTCTACAAGTGCATCTACTTCTCAACCGGGTCAACTCCACCCGAGTTACTTCCAGTCGCGAACACAGCAATACTTGCCTCACCTTTATGGAGGATATGCTGTTAATAGGTCACCATATCTTGGAGTTGCAGCCCTGACTAGTTTTGCCAATCCTATAATCAACATGTTCAGGGAAACAGACCTTGCGAGGACCTTTGGGAGTTCTGAGTCTAATCCATTGGTGTTTCGCTATGTTGGTTACTACCCTCATAGTGGAAGTGACAGTCACAGAATGAGAAGGCAGGAAATGCTTATTGACAAGTCTCTAAGTAGAGTATCTTTTTTCCTTCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTCTGA 762 0.4528 MDSTRFDCHGGVSSKKNLKSISSQTSAADSDNNGCFECNICLESAHDPVVTLCGHLYCWPCIFRWLQVHNSSDDESDRLHPTCPVCKADLSHTSLVPLYGRGAHSSDSELKKTRTDRSIPRRPPPHSSNTMLNSTSASTSQPGQLHPSYFQSRTQQYLPHLYGGYAVNRSPYLGVAALTSFANPIINMFRETDLARTFGSSESNPLVFRYVGYYPHSGSDSHRMRRQEMLIDKSLSRVSFFLLCCVILCLLLF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1011 253 CDD RING-HC_AtRMA_like 36 88 - -
Mibi07g1011 253 Pfam Zinc finger, C3HC4 type (RING finger) 37 70 - -
Mibi07g1011 253 SMART ring_2 38 86 IPR001841 -
Mibi07g1011 253 MobiDBLite consensus disorder prediction 99 146 - -
Mibi07g1011 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 142 IPR013083 -
Mibi07g1011 253 MobiDBLite consensus disorder prediction 105 121 - -
Mibi07g1011 253 MobiDBLite consensus disorder prediction 122 146 - -
Mibi07g1011 253 SUPERFAMILY RING/U-box 34 99 - -
Mibi07g1011 253 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 250 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mibi07g1011 253 ProSiteProfiles Zinc finger RING-type profile. 38 87 IPR001841 -
Mibi07g1011 253 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1011 Mibi-ChrMibi07 13927438 13928199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1011 2 239 C3H Transcription Factor Family AT4G27470 39.256 9.65e-45 149