Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g1000 ATGAGCAAAAAAGGGAACGAAGAAGAAGAAGAAGACGAGTGCTTCTACGAGTCCCACGACCGATTAGTTTCTTCATCTTGTTCTTGTTCTACTTCAAACTCTGACGATGATAACGATTCCAATTCAAACTCACCCAATTATGGTTTTCCCTTCCCTGTCCCCAGATTCCCAAAAGCCATGTCAAAGTATGATATTTGGATCTCTGAACCCTCCTCTGTGTTGGAACGAAGGACTCGTCTTCTTCATGAGATGGGTCTCAGTGGTGACCCTTCATTGTCAAGGGGAAAGCTTGCTTTTTCTTCTGATGATGTTATTAGAGAGATGGCTAATGATAATGGAGAGTTTGGTCGATCGGTTTCGTCTGATCATTTGATTGGTCAACAAGAGGTTGCTAGTTGTTCAAGTGGCTCCAATGGTATGTTCCGATCGAAATCAGATGGGGTGGTGGATTGTGGTGAGTCTTCTTCTTCTTTGTCTGGTCGGTCTCATGATCGTTGTTGTAAGAAAAAATCTTGTTTTTGTAAGTCTTCTTCAATTCTTTCTATTCATTCGGTCACTAGGCCTAATGAGACCGGTTCATTTGTAAATAACCGTAATGTTGTTGTTAAGTCAAGGGGGGTTCATGGTAATGGATCACCAGTTGGTAGTTTTGCTGCTTCCCTTAATAAGCCGCCTTCTGGGAAAAATTGTAAAAGGGTGGATGAGATACAAAGCGAATCGTCGAATTTGAGTGTGGATTTTGGTCATAGTTTGGTGGTGTCTGTTTCTGAGATTGCGGGTGAGGAGGTAGAGGAGGTTGTGGACTGTAATGGGGTTGAAAGGGTAAATGAACAAGTTTGCACCATAAGAGATCTTGATAATGGGAAGGAGTTTGTAGTTAAGGAGATTAGGGAGGATGGGACGTGGAGCAAACTCAAAGAAGTGGGGACTGGAAGGCAGTTGACCATGGAGGAGTTTGAGATGACTGTTGGGCACTCTCCAATAGTTCAAGAATTGATGAGACGCCAAAATGTTGAGGATGGGAATAAGGATAATGTAGATTCTAATGTGAGTGGTGGTAGTGGAGGGAGTTCCAAGCCAAAGAAGAAGGTGGGTTGGTTTAAGAGTATCAAGAGTGTTGCAAGCAGTATGACGGGTTATAAGGAGAGGCGAAGTAGTGATGAAAGAGATACCTCATCTGAGAAGGGTGGGCGTAGGTCAAGCTCGGCTACGGATGATAGCCAGGATGGTTCATTTCATGGGCCTGAGAGAGTACGGGTTAGGCAATATGGGAAGTCTTGCAAAGAGCTCACAGGACTGTATAAAAGCCAGGAAATACAGGCTCATAGTGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGAAAATATCTTGCCAGTGCAGGTGAGGATTGTGTGATACATGTTTGGCAAGTTGTGGAATCAGAGAGGAAGGGAGAGCTATTGATGGAGAAAGCAGAAGATGGGAATATGAACATGTTGTTTGTTGTGAATGGGTCGCCAGAGCCAACTATGCTCTCCCCTGCAATGGACAGTCTTTCAGACAAGAAAAGAAAGGGGAGGTCATCCATAAGCAGAAAATCGTTGAGTTTGGATCAATTAATGGTGCCAGAAACTATTTTTGCTCTCACAGAAAAACCCTTTTGCTCATTCCAAGGCCACGATGATGATGTCCTTGACCTATCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGGCTGTGGCACTTGACTAGCAAGACTTGTTTGAAAGTTTTTTCACACAGTGACTATGTAACCTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCACTGGATTCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTATACTGATCTTCATGAGATGGTTACTGCGGCTTGTTATACATCTGATGGGCAGGGTGCATTAGTTGGTTCTTACAAGGGTAGCTGCCATTTGTATGATACATCTGATAATAAGTTGCAACAGAAAAGCCAAATCAATTTGCAGAACAAGAAAAAGAAGTCGCATCACAAGAAAATCACCGGCTTCCAGTTTGCCCCAGGAAGTTCTTCAGAAGTACTTATCACGTCTGCTGATTCAAGGATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGATTTCGTAACCCAAATAGCCAGATTTCTGCCTCTCTCACAGCAAATGGTAAATATGTAATCTCAGCAAGTGAGGATTCCCATGTATATATATGGAAAAATGAAGCTGATTGCAGACCTAACCGGAGCAAGGGGGTCACTGTAACGCAATCATATGAACATTTTCATTGTAAAGATGTTTCAGTGGCAATTCCTTGGCCTGGCATGGGCGATGCTTGGGAAATACCCGATGCTTTCTCTGGAGAACAGGCCGCAGATGATAACATTCTGGATGATGTTATGTCTGCCAATCATCCTCCCACTCCAGTTGAGGAAAACTTTGGTACTGATGGTTCGCAATCGGCATCAGGATGCACCAACAGTCCTCTTCATGGAACAATTGCAAGCACAACAAACGATTACTTCTTCGATAGAATTTCCGCGACATGGCCGGAGGAAAAACTTGTTGTAGCTGCTCGGAACCGAACCCCTCGAATCAGTATAGATCTCTCCAATGGGGTGTGCCAAAACATGTCAGCATGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCAATTCGGATATAA 2778 0.4334 MSKKGNEEEEEDECFYESHDRLVSSSCSCSTSNSDDDNDSNSNSPNYGFPFPVPRFPKAMSKYDIWISEPSSVLERRTRLLHEMGLSGDPSLSRGKLAFSSDDVIREMANDNGEFGRSVSSDHLIGQQEVASCSSGSNGMFRSKSDGVVDCGESSSSLSGRSHDRCCKKKSCFCKSSSILSIHSVTRPNETGSFVNNRNVVVKSRGVHGNGSPVGSFAASLNKPPSGKNCKRVDEIQSESSNLSVDFGHSLVVSVSEIAGEEVEEVVDCNGVERVNEQVCTIRDLDNGKEFVVKEIREDGTWSKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEDGNKDNVDSNVSGGSGGSSKPKKKVGWFKSIKSVASSMTGYKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHSGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKAEDGNMNMLFVVNGSPEPTMLSPAMDSLSDKKRKGRSSISRKSLSLDQLMVPETIFALTEKPFCSFQGHDDDVLDLSWSKSQHLLSSSMDKTVRLWHLTSKTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDSKVRIWSIPDRQVVDYTDLHEMVTAACYTSDGQGALVGSYKGSCHLYDTSDNKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNPNSQISASLTANGKYVISASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWEIPDAFSGEQAADDNILDDVMSANHPPTPVEENFGTDGSQSASGCTNSPLHGTIASTTNDYFFDRISATWPEEKLVVAARNRTPRISIDLSNGVCQNMSAWGMVIVTAGLRGEIRTFQNFGLPIRI 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 585 - -
Mibi07g1000 925 SMART WD40_4 432 471 IPR001680 GO:0005515
Mibi07g1000 925 SMART WD40_4 544 582 IPR001680 GO:0005515
Mibi07g1000 925 SMART WD40_4 626 665 IPR001680 GO:0005515
Mibi07g1000 925 SMART WD40_4 585 624 IPR001680 GO:0005515
Mibi07g1000 925 SMART WD40_4 672 717 IPR001680 GO:0005515
Mibi07g1000 925 SMART WD40_4 718 759 IPR001680 GO:0005515
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 591 IPR001680 GO:0005515
Mibi07g1000 925 SUPERFAMILY WD40 repeat-like 433 761 IPR036322 GO:0005515
Mibi07g1000 925 PANTHER WD REPEAT DOMAIN 44 6 922 IPR040324 -
Mibi07g1000 925 FunFam WD repeat-containing protein 44 532 798 - -
Mibi07g1000 925 MobiDBLite consensus disorder prediction 378 418 - -
Mibi07g1000 925 Pfam WD domain, G-beta repeat 587 624 IPR001680 GO:0005515
Mibi07g1000 925 Pfam WD domain, G-beta repeat 721 759 IPR001680 GO:0005515
Mibi07g1000 925 Pfam WD domain, G-beta repeat 546 581 IPR001680 GO:0005515
Mibi07g1000 925 Pfam WD domain, G-beta repeat 438 470 IPR001680 GO:0005515
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 625 - -
Mibi07g1000 925 MobiDBLite consensus disorder prediction 339 362 - -
Mibi07g1000 925 Gene3D - 529 784 IPR015943 GO:0005515
Mibi07g1000 925 Gene3D - 409 506 IPR015943 GO:0005515
Mibi07g1000 925 FunFam Transducin/WD40 repeat-like superfamily protein 397 500 - -
Mibi07g1000 925 MobiDBLite consensus disorder prediction 381 402 - -
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 439 480 IPR001680 GO:0005515
Mibi07g1000 925 PRINTS G protein beta WD-40 repeat signature 569 583 IPR020472 -
Mibi07g1000 925 PRINTS G protein beta WD-40 repeat signature 611 625 IPR020472 -
Mibi07g1000 925 PRINTS G protein beta WD-40 repeat signature 458 472 IPR020472 -
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Mibi07g1000 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 439 472 - -
Mibi07g1000 925 MobiDBLite consensus disorder prediction 24 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g1000 Mibi-ChrMibi07 13721865 13727586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g1000 538 756 U-box Gene Family AT1G04510 27.500 7.15e-07 51.2