Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0785 ATGAGTAGTATTCCCCCCGACGGCGGCGCCGCCTTCCCTTACGACTTTCCGGCGGCAAATTTCCCAAGAAGATCCTACTCCGACGACAACACGCACAACACTAATAACATGAACAGCAACATCTTGTACATAGCCATAATTTCATTATCCATCGTCCTAGTCCTTGTCTTCGCCCTCCATCTTTACGCCAGATTCGTCCTCCGCCGCCAAGCCCGCCGCCGCGCCGCCATCCACCACCTCACCCTCGCCGTCGCCCGACACTCCTCCGCCGACCCCCCCATCAACCCCGGCCTCGACCCCGCCGTCATTTCCTCCCTCCCCACCTTCACCTTCAAAAAACGAATCTCCGGCGCCGGAGATACCATCGGCACCGGAGATTCCGCCGGAGAATCTTATTCTCGCTCCTCTGCTTTGGAATGCTCTGTTTGTTTGAGCAATGTGGAGGATGGGGAGGAGGTGAGGTTGTTGCCTAATTGCAAGCACGTGTTCCACGTGGGCTGTATTGACAGGTGGCTGGCGGCTCATTCCACGTGTCCGGTCTGTCGGACCGGGGCTCGGCCGGTGGTGATCGAGCCGAGGCCGAGGGAGGGCCCGGTTCGGGTGGGGCCCACCGCGGAGGGTACATCGGAGGGTGGTGGGGGTAAGAGTGGTGGATCGGTTTCAAGGTTGAGCTCGTTTAGGAGGATTCTAAGTAGAGAAAGGTCTTCTAGAAGAATCCAACCACCTTCTTCTTCTTCCTCTGTTTTTGATGATTGTATTGATCGTGATTTAGAGAGACAGTGA 783 0.5683 MSSIPPDGGAAFPYDFPAANFPRRSYSDDNTHNTNNMNSNILYIAIISLSIVLVLVFALHLYARFVLRRQARRRAAIHHLTLAVARHSSADPPINPGLDPAVISSLPTFTFKKRISGAGDTIGTGDSAGESYSRSSALECSVCLSNVEDGEEVRLLPNCKHVFHVGCIDRWLAAHSTCPVCRTGARPVVIEPRPREGPVRVGPTAEGTSEGGGGKSGGSVSRLSSFRRILSRERSSRRIQPPSSSSSVFDDCIDRDLERQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0785 260 CDD RING-H2_PA-TM-RING 139 182 - -
Mibi07g0785 260 FunFam E3 ubiquitin-protein ligase ATL6 86 187 - -
Mibi07g0785 260 SMART ring_2 140 181 IPR001841 -
Mibi07g0785 260 MobiDBLite consensus disorder prediction 192 260 - -
Mibi07g0785 260 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Mibi07g0785 260 Pfam Ring finger domain 139 182 IPR001841 -
Mibi07g0785 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 186 IPR013083 -
Mibi07g0785 260 MobiDBLite consensus disorder prediction 236 250 - -
Mibi07g0785 260 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 187 - -
Mibi07g0785 260 SUPERFAMILY RING/U-box 139 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0785 Mibi-ChrMibi07 9709889 9710671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0785 33 240 C3H Transcription Factor Family AT2G42360 45.701 2.73e-50 163