LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi07g0737	ATGTCTCAACCCAACCTTGTAAGATTACACAAGTCTTTCTTTTCTGCAGTTTTATTTGCATCAAGCGAAACACAACACAACAGAGCAACAATGACTGTGAAGGAAAAGCTAGGAGTCAAGCACACCAAACCAAACATTGGCAAGGAAGTTCACTACAGAGGCGTACGGAAGAGACCATGGGGCCGTTACGCCGCCGAGATTCGAGATCCCGGCAAGAAGAGTCGCGTCTGGCTAGGAACCTTCGACACTGCCGAGGATGCCGCCAGAGCCTACGACACCGCCGCCCGCCAATTCCGCGGCCCAAAGGCCAAGACCAATTTCCCCCTTCCCAACGAACACAACCAGAGCCCAAGCGAGACTAGCACCGTCGAGTCATCCTCCAGCCGTGACGTCACGCGCCTCCCCTGTGATGTTGCCGATCGGTTCCCGTTCCTCCCGGTTCAGCCGCAGCATGTGGGTTTTGTTGGCGGCGGTTTAGTGCCGGCGGTTAGGCCGGTTTTCTTTTTCGAACCGGCGGCCCGTGGTCTGGTGTATCCGTTTCCGGTTGATGTTAAGGGTAAAATGGGAAGTGCGGCTTCGAGTGACTCGGATTCTTCCTCTGTTGTTGATTGTCAGCCGAAGAAAGTCATTAATCTGGATCTTAATCTGGCTCCACCATCGGAAGATTGA	669	0.5381	MSQPNLVRLHKSFFSAVLFASSETQHNRATMTVKEKLGVKHTKPNIGKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEDAARAYDTAARQFRGPKAKTNFPLPNEHNQSPSETSTVESSSSRDVTRLPCDVADRFPFLPVQPQHVGFVGGGLVPAVRPVFFFEPAARGLVYPFPVDVKGKMGSAASSDSDSSSVVDCQPKKVINLDLNLAPPSED	222

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi07g0737	222	MobiDBLite	consensus disorder prediction	108	130	-	-
	Mibi07g0737	222	Gene3D	AP2/ERF domain	50	109	IPR036955	GO:0003700\|GO:0006355
	Mibi07g0737	222	MobiDBLite	consensus disorder prediction	99	130	-	-
	Mibi07g0737	222	PRINTS	Ethylene responsive element binding protein signature	52	63	IPR001471	GO:0003700\|GO:0006355
	Mibi07g0737	222	PRINTS	Ethylene responsive element binding protein signature	74	90	IPR001471	GO:0003700\|GO:0006355
	Mibi07g0737	222	SUPERFAMILY	DNA-binding domain	51	109	IPR016177	GO:0003677
	Mibi07g0737	222	SMART	rav1_2	51	114	IPR001471	GO:0003700\|GO:0006355
	Mibi07g0737	222	ProSiteProfiles	AP2/ERF domain profile.	51	108	IPR001471	GO:0003700\|GO:0006355
	Mibi07g0737	222	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	32	172	-	-
	Mibi07g0737	222	CDD	AP2	51	108	IPR001471	GO:0003700\|GO:0006355
	Mibi07g0737	222	FunFam	Ethylene-responsive transcription factor 2	50	109	-	-
	Mibi07g0737	222	Pfam	AP2 domain	51	100	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi07g0737	Mibi-ChrMibi07	9088558	9089226	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi07g0737	25	222	AP2-EREBP Transcription Factor Family	AT5G44210	45.622	4.18e-49	157

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi07g0737		AP2	2.1e-14	CL0081