Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0583 ATGTTGCCGCAACGTTCTGCCTTCGATGTTCTTATGTCAGGGGCTCGTGCCGCCGCCACGAGGAAGCCTCAATTACTAAATTCGATCCCTAATCCTATACAGCGACCAAATACTAAATGCGCCGACACTGACATTAGAGATTCTGAACCGAAGAGAATGCGGCTTGTAAGTTCTAAGGAGAACACTACAGAACTTAAGGAGAAAGTTCCTCTCTTGAAGAAAAAGCCTGCAGATTTTGACACCAGTTCGATATCTTGTTGGGACAAGGGTGAAGATGTGCCCTTTCTGTTTCTCTGCTTGGCATTTGATATGATTGCAGAAGAAACGGGACGGATTGTGAGTACAGATATAGTGTGCAATATGCTGAGGACTGTCATTTACACTACACCCAATGATCTGGTGGCTGTTGTTTCTCTCTTGGCAAATAAGATTCCTCCTGATCCACTCAAAGATGTGGACTTGGGAATAGGGGATGCTGCACTTATGCGTGAAGGGGTGAAATTGGGAATAGGGGATGTTGCACTTATTAAGACGCTTGCAGATGTATGTGGAAGAAGTACGTCGGAGATAACCAATCAGTATAAGTCAAAGTTGCGAATTGGATGTGCTGAGCAAACATTATTAACTGCACTGGGCCAGGCTGCAGTATATGCAGGAGGACATCATGTATCTCACACTAAGATTCAGTCCTCTTTAGAAGAGGCTGCAAAGATTGTTAAACAGGTGTATTCTGTTCTTCCTGTGTATGGCAAAATAATTCCTGCATTGCTTGGTGGAGGTATATGGAAACTTCCGGAGACGTGTAACTTTACTATTGGTGTTCCAGTTGAACCTATGTTGTCTAGGGCAGCGAAGGGTGTATCTGAAGTTCTAAGTAAATTCCAGGATATACATTACATGGATGATGGAACAGTTAAGATTTACAGTAGAAACGCTGAACTGAACACAGAAAAATTTCCCGATGTTGTTGCTGCTATTTTAAGGCTAAAGAAGTCGTCTGTTTCATCACTTGTTCTTGATTGTGAACTTGTTGCATATGACCGAGAAAAAAAGAAAATTCTTCCTTTTCAGCATCTCTATGCCTCTTTCGAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAATACAAAAGTTTCTGGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGATGCTACTTACGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATGGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGCAATAATGAAGAGTTCCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAGTGCTAGAAGAACGTTCTGCTAGTCTTCGTTCCAAAGTGATTCCCAAAGCAAAGCCTTACTATCAATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCTTCTGAGGTATGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAATAGGCATAGTAGATTCAGATAAGGTACGAGCAATCGTTGATACTGAATTACTAGGAAAATTTTCTTTTCATGTACTTGTCGTTGCTCAAAAGCACAACCTCCCAAACAACCAGGATCAGGATGAAGATTGA 1737 0.4203 MLPQRSAFDVLMSGARAAATRKPQLLNSIPNPIQRPNTKCADTDIRDSEPKRMRLVSSKENTTELKEKVPLLKKKPADFDTSSISCWDKGEDVPFLFLCLAFDMIAEETGRIVSTDIVCNMLRTVIYTTPNDLVAVVSLLANKIPPDPLKDVDLGIGDAALMREGVKLGIGDVALIKTLADVCGRSTSEITNQYKSKLRIGCAEQTLLTALGQAAVYAGGHHVSHTKIQSSLEEAAKIVKQVYSVLPVYGKIIPALLGGGIWKLPETCNFTIGVPVEPMLSRAAKGVSEVLSKFQDIHYMDDGTVKIYSRNAELNTEKFPDVVAAILRLKKSSVSSLVLDCELVAYDREKKKILPFQHLYASFEEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENMGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKAKPYYQYAETINPDVWFEASEVWEVKAADLTISPVHRAAIGIVDSDKVRAIVDTELLGKFSFHVLVVAQKHNLPNNQDQDED 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0583 578 Pfam DNA ligase N terminus 94 196 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi07g0583 578 ProSiteProfiles ATP-dependent DNA ligase family profile. 357 461 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi07g0583 578 Gene3D - 72 195 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi07g0583 578 Gene3D - 196 277 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi07g0583 578 CDD Adenylation_DNA_ligase_I_Euk 267 426 - -
Mibi07g0583 578 Pfam ATP dependent DNA ligase domain 359 423 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi07g0583 578 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 51 196 - -
Mibi07g0583 578 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 270 429 - -
Mibi07g0583 578 CDD OBF_DNA_ligase_I 431 543 - -
Mibi07g0583 578 Gene3D - 432 549 IPR012340 -
Mibi07g0583 578 SUPERFAMILY Nucleic acid-binding proteins 431 542 IPR012340 -
Mibi07g0583 578 Gene3D - 360 431 - -
Mibi07g0583 578 ProSitePatterns ATP-dependent DNA ligase signature 2. 397 423 IPR016059 GO:0003909
Mibi07g0583 578 Gene3D DNA ligase/mRNA capping enzyme 278 359 - -
Mibi07g0583 578 FunFam DNA ligase 428 547 - -
Mibi07g0583 578 Pfam ATP dependent DNA ligase C terminal region 448 534 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mibi07g0583 578 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 77 269 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0583 Mibi-ChrMibi07 7149297 7154810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0583 6 578 Core DNA Replication Machinery Family AT1G08130 48.847 0.0 634