Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0550 ATGTATAATGTAGCAGCAAGAAATGAACAACCACCCGGTGATGCCTCTGGAGAAGCTCAAACTGCTAGCCCTTCTGGCAATAATGCTATTAAAGTCTCTTCTGATTCACATTCCAACTTTGAAGATGAAGAAGAAGCTTCTCGCTTCTTTATTGACTTAAACAAAGAACCTTCTCCAAGCTCTTGCCCTTCTGATTCACATTCCAACTTTGAAGATGAAGAAGCTTCTCGCTTCTCTTTTGACTTAAACAAAGAACCTGCTCCAAGCCCTTGCCCTTCTGATGAGGCAGACGGCAACTCTGATTCATCCGGAGGAGGAAACAAAAGGAGAAAACTTAGCTCAGAAAATGTAGAGTCCAGTCAGAATATGGGAGTGTTGGAGCATGGAGACAATGTTGGATCCCCAAGAGTTCAGCAGCTATCAATTGACCATGATTTGGTTAGCCCGGAGGAGAAGGAAAAAACGGACAGAGGAAGAGGAAAAGGTCCAAAGCCAGTGTTGTTGTGGCAGGTATTGGAAGAGCGGGATAAAAGATTTGTTGATGCAAATTTATTAGAGGATATGGAATTGGATCATCAGGATGAACAAATGAGTGAAACCGTTGAGGCTTCCTCTGACCTTACTGTACCATTGCTAAGATATCAAAAGGAATGGTTAGCATGGGCTTTGAAACAGGAGGAGAATTCTGACATTAGGGGGGGTCTTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAACAATTGCTCTTGTCCTTGCCCAGCGTGAAATCCGGAAAATGGCTTGTGAACCAAATGAAACATCCTCCTTGCCAAGTGCATTTACTGCCTTGCTTGAGTTAAAGGGAACGCTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGCGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGTTAGTTTATCATGGGGCCAAGAGATGGAAGTTTAGGGAAGAGATCTCAGAGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCTGAGTACAGGAAGTATATGATGCCTCCGAAAGACCAGTGCCCAGATTGCGGCAGATCTCTCACAATGGGGAAAAATTGTCACCGAAGACATTATTGTGGGCCAAATGCTGAGAGAACACAAAAACGATCAAAGCAGCTCAAGAAGGGATCATATAATTCAGATACCACACACGAGGGGTTTCTTGACCACAGATATGTTCGGTTAAATAATGACAGAAATATTGGTGCTTATATATTTGAACTCCTGACCAGACTTCGGCAGAATAGGTTTTCCACACTGCATTTCAATCTGGATTTTTCTTGCGGGAACTGGGAGGCTGTTGATCATCCATACCTTGTGTTATATTCTCGAGCTCCATCATTAGAAGCTGGGGTTGAGGTTAGCAATGACAAAGTTGAACAACAATGTGGCCTTTGTCATAACCCAGTAGAAGGTCGTGTGGTTACGTCATGTGGACACATCTTTTGTGAGCCATGCTTGATAGACTTCTCTGCTTCATTGGGGCAAGTGTCGTGTCCTTCATGCTCCAAATTACTTTCTGTTGATTTTACTGCAAAAGATGATGTTGGGGATCAGTCTAAAAGAACAATATTGAAGAATTTCAAACCCTCAAGCATTTTATATAGAATTGAGCTTGAGGACTTCCAAACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTTATGGTAGAAAGGGATGGCTCGGCAAAAGCGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATACAGTTCTCCCTGATGAAGTCTGACGTGTCTTGCGTTCAACTGAATGGAAGCATGTCATTAAAAGCTCGGGATGCAGCAATTAAGAAATTCACTAATGAGCCAGAATGCAGAATTTTTCTCATGAGCTTGAAAGCTGGTGGCATTGCCCTCAATTTGACTGTAGCATCACATGTGAATAATCTTCTTTTGTACACTGTTTTGCGTAAAATTCATCAATATACTGATTTAGCTGTGAAATGA 2022 0.4169 MYNVAARNEQPPGDASGEAQTASPSGNNAIKVSSDSHSNFEDEEEASRFFIDLNKEPSPSSCPSDSHSNFEDEEASRFSFDLNKEPAPSPCPSDEADGNSDSSGGGNKRRKLSSENVESSQNMGVLEHGDNVGSPRVQQLSIDHDLVSPEEKEKTDRGRGKGPKPVLLWQVLEERDKRFVDANLLEDMELDHQDEQMSETVEASSDLTVPLLRYQKEWLAWALKQEENSDIRGGLLADEMGMGKTIQTIALVLAQREIRKMACEPNETSSLPSAFTALLELKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRWKFREEISEYDFVITTYSTVESEYRKYMMPPKDQCPDCGRSLTMGKNCHRRHYCGPNAERTQKRSKQLKKGSYNSDTTHEGFLDHRYVRLNNDRNIGAYIFELLTRLRQNRFSTLHFNLDFSCGNWEAVDHPYLVLYSRAPSLEAGVEVSNDKVEQQCGLCHNPVEGRVVTSCGHIFCEPCLIDFSASLGQVSCPSCSKLLSVDFTAKDDVGDQSKRTILKNFKPSSILYRIELEDFQTSTKIEALREEIRFMVERDGSAKAIVFSQFTSFLDLIQFSLMKSDVSCVQLNGSMSLKARDAAIKKFTNEPECRIFLMSLKAGGIALNLTVASHVNNLLLYTVLRKIHQYTDLAVK 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0550 673 Gene3D - 182 351 IPR038718 -
Mibi07g0550 673 SMART ultradead3 207 420 IPR014001 -
Mibi07g0550 673 CDD SF2_C_SNF 552 652 - -
Mibi07g0550 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 535 IPR013083 -
Mibi07g0550 673 ProSiteProfiles Zinc finger RING-type profile. 477 517 IPR001841 -
Mibi07g0550 673 MobiDBLite consensus disorder prediction 36 51 - -
Mibi07g0550 673 Pfam Helicase conserved C-terminal domain 561 658 IPR001650 -
Mibi07g0550 673 MobiDBLite consensus disorder prediction 14 35 - -
Mibi07g0550 673 CDD DEXDc_SHPRH-like 211 369 - -
Mibi07g0550 673 ProSitePatterns Zinc finger RING-type signature. 492 501 IPR017907 -
Mibi07g0550 673 SUPERFAMILY RING/U-box 474 520 - -
Mibi07g0550 673 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 395 652 - -
Mibi07g0550 673 Pfam Zinc finger, C3HC4 type (RING finger) 477 516 IPR018957 GO:0046872
Mibi07g0550 673 MobiDBLite consensus disorder prediction 1 162 - -
Mibi07g0550 673 Gene3D - 538 660 IPR027417 -
Mibi07g0550 673 MobiDBLite consensus disorder prediction 95 127 - -
Mibi07g0550 673 SMART ring_2 477 516 IPR001841 -
Mibi07g0550 673 MobiDBLite consensus disorder prediction 145 161 - -
Mibi07g0550 673 Pfam SNF2-related domain 223 348 IPR000330 GO:0005524|GO:0140658
Mibi07g0550 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 345 IPR027417 -
Mibi07g0550 673 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 657 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0550 Mibi-ChrMibi07 6644834 6650895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0550 406 652 RAD5 or RAD16-like Gene Family AT1G05120 62.753 1.24e-94 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi07g0550 SNF2_N 9.4e-26 CL0023