Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0549 ATGGAGCTTCGTTCTCGTAGGCGACTTCCTCCTCCTTTTACTGCTGCTCATGATGCTGCAAGAAATGAGCAACCACCCGGTGATGCCTCTGGAGAAGCTCAAACTGCTGGCAATTCTGGCAATAATGCTAATGAAATCTCTTCTGGTTCACATTCCAAAGAACCTACTCCAAGCTCTTGCCCTTCTGATGAGGCTGACGGCAAATCTGATTCATCCGGAGGAGGAAAAAAAAGGAGAAAAGTTAGCTCAGAAAATGGAGAGTCCAGTCAGAATATGGGAGTGTTGGAGCATGGAGACAATGTTGAATCCCCAAGAGTTCAGCAGCAATCAATTGACCATGATTTGGGTAGCCCGAAGGAGAAGAAAAAAACAAAAAGAGGAAAAAGAAAAGGTCCAAAGCCAGTTTTGTTCTGGCACGTATTGGAAGAGCAGAATGAAAGGTTTGTTGATGCAAATTTATCAGAGGATATTGATTTGGATCATCAGGATGAACAAATGAGTGAAACCGTTGAGGCTTCCTCTGACCTTACCGTGCCATTACTAAGATATCAAAAGGAATGGCTAGCATGGGCATTGAAACAGGAGAATTCTGACATTAGGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAGCGTGAAATCCGGAAAATGGCCTGTGAACCAAATGAAACATCCTCCTTGCCAAGTGCATTTACTTCCTTGCTTGAGACAAAGGGAACGCTTGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTCTAAAAGGAAGCACCAAGGTGCTAATTTATCATGGGGCCAAGAGAGGGAAGTGTAGGGAAGAGATCTCAGAGTATGATTTTGTAATAACTACATACTCTACTGTTGAATCTGAGTACAGGAAGTATATGATGCCTCCGAAGGAGAAGTGCCCAGATTGCGGCAAATCTATCAGTCAGGAGAAGTTAAATTATCACCGGAGGTATTATTGTGGCCCAAGTGCTGAGAGAACAGAAAAACAATCAAAGCAGCTCAAGAAAGGGAAAAAAGTTAATATAAAGAAGGTAACTCATATGAACAAGAGATCATATAATTCAGACGCTACACACAAGGGATGGTCACTATTACATAGTGTAAAGTGGCACCGGATCATTCTGGATGAGGCACACTATATAAAATCCAGACATTGTAACACTGCAAAAGCAGTTGTTGCTCTAGAGTCTTACTATAGATGGGCGTTAAGTGGAACTCCCCTTCAAAATCGTGTTGAAGAGCTGTACTCTCTGATACGTTTCTTGCAAATAGTTCCTTATTCCTATTACTTCTGCAAGGACTGTGATTGCAGGATTCTTGACCACTGCTCTAAGGAATGCCCATACTGCCATCACAGTTCTACCAGACATTTCTGTTGGTGGAATAAATATGTGGCTACCCAAGTTGGATACAGAGACTTTGATGCTGGAAGGAGAGCAATGATATTGCTTAAACACAAGGTCTTGAAAAATGTAATATTAAGGCGCACTAAAGTAGGCCGGGCTGCTGATCTCGCACTTCCACCTAGAATTGTTTCATTGAGAAAGTATAGCCTGGATATAAAAGAGCTCGACTATTATGAATCATTGTACAATGAGAGTCAGGCGCAGTTTGATACATATGTTCGATCAAATACTTTGACGAATAATTATGCTCATATATTTGACCTCCTGACCAGACTTAGACAGGCTGTTGATCATCCATACCTTGTGATATATTCTCAAGCTGCGTCATTAGAAGCTGGGGTTGAGGTTTGCAATGACAAAGTTGAACAACAATGTGGCCTTTGTCATGACCCAGTAGAAGATCGTGTGGTTACCTCATGTGGACACATTTTTTGTAAGCCATGCTTGATAGACTTCTCTGCTTCCTTGGGGCAAGTGTCGTGTCCTTCATGCCCCAAATTACTTACTGTTGATTTTACTTCGAAAAATGATGTTGGGGATCAGTCTAGAAAAACAACAATAAAGGGTTTCAGAGCATCAAGCATCTTAAATAGAATTAAGCTTGAGGACTTCCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATATATGGTAGAAAGGGATGGCTCTGCAAAAGCGATTGTTTTTAGCCAGTTCACTTCATTCTTGGATCTCATACAGTTCTCCCTGATGAAGTCTGGTGTGTCTTGCGTTCAACTGAATGGAAGCATGTCCTTAAATGCTCGAGATGCAGCCATTAAGAAATTCACTGATGAGCCAGAATGCAAAATTTTTCTCATGAGTTTGAAAGCTGGTGGCGTTGCCCTCAATTTGACTGTAGCATCACATGTTTTCATTATGGACCCTTGGTGGAACCCAGCTGTAGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCAATCAGAATTGTGAGGTTTGTGATCGAGAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAAAAGAAGGAGCTACTATTTGAAGGGACTGTCGGCGGCTCTTCCGAAGCTTTGAACAGACTCGATGCTTCAGACTTGAGATATCTGTTTTCTTTTTAA 2613 0.4187 MELRSRRRLPPPFTAAHDAARNEQPPGDASGEAQTAGNSGNNANEISSGSHSKEPTPSSCPSDEADGKSDSSGGGKKRRKVSSENGESSQNMGVLEHGDNVESPRVQQQSIDHDLGSPKEKKKTKRGKRKGPKPVLFWHVLEEQNERFVDANLSEDIDLDHQDEQMSETVEASSDLTVPLLRYQKEWLAWALKQENSDIRGGILADEMGMGKTIQAIALVLAQREIRKMACEPNETSSLPSAFTSLLETKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGAKRGKCREEISEYDFVITTYSTVESEYRKYMMPPKEKCPDCGKSISQEKLNYHRRYYCGPSAERTEKQSKQLKKGKKVNIKKVTHMNKRSYNSDATHKGWSLLHSVKWHRIILDEAHYIKSRHCNTAKAVVALESYYRWALSGTPLQNRVEELYSLIRFLQIVPYSYYFCKDCDCRILDHCSKECPYCHHSSTRHFCWWNKYVATQVGYRDFDAGRRAMILLKHKVLKNVILRRTKVGRAADLALPPRIVSLRKYSLDIKELDYYESLYNESQAQFDTYVRSNTLTNNYAHIFDLLTRLRQAVDHPYLVIYSQAASLEAGVEVCNDKVEQQCGLCHDPVEDRVVTSCGHIFCKPCLIDFSASLGQVSCPSCPKLLTVDFTSKNDVGDQSRKTTIKGFRASSILNRIKLEDFQTSTKIEALREEIRYMVERDGSAKAIVFSQFTSFLDLIQFSLMKSGVSCVQLNGSMSLNARDAAIKKFTDEPECKIFLMSLKAGGVALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELLFEGTVGGSSEALNRLDASDLRYLFSF 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0549 870 CDD SF2_C_SNF 698 825 - -
Mibi07g0549 870 SMART helicmild6 731 814 IPR001650 -
Mibi07g0549 870 MobiDBLite consensus disorder prediction 1 131 - -
Mibi07g0549 870 SMART ring_2 616 655 IPR001841 -
Mibi07g0549 870 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 860 IPR001650 -
Mibi07g0549 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 449 IPR027417 -
Mibi07g0549 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 673 IPR013083 -
Mibi07g0549 870 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 447 IPR014001 -
Mibi07g0549 870 Gene3D - 530 870 IPR027417 -
Mibi07g0549 870 Gene3D - 151 319 IPR038718 -
Mibi07g0549 870 MobiDBLite consensus disorder prediction 28 66 - -
Mibi07g0549 870 ProSitePatterns Zinc finger RING-type signature. 631 640 IPR017907 -
Mibi07g0549 870 MobiDBLite consensus disorder prediction 85 113 - -
Mibi07g0549 870 Pfam Zinc finger, C3HC4 type (RING finger) 616 655 IPR018957 GO:0046872
Mibi07g0549 870 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 868 - -
Mibi07g0549 870 MobiDBLite consensus disorder prediction 69 84 - -
Mibi07g0549 870 SUPERFAMILY RING/U-box 613 660 - -
Mibi07g0549 870 Pfam Helicase conserved C-terminal domain 701 814 IPR001650 -
Mibi07g0549 870 Gene3D - 327 468 IPR038718 -
Mibi07g0549 870 SMART ultradead3 176 453 IPR014001 -
Mibi07g0549 870 CDD DEXDc_SHPRH-like 180 518 - -
Mibi07g0549 870 Pfam SNF2-related domain 194 593 IPR000330 GO:0005524|GO:0140658
Mibi07g0549 870 ProSiteProfiles Zinc finger RING-type profile. 616 655 IPR001841 -
Mibi07g0549 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 869 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0549 Mibi-ChrMibi07 6613139 6619982 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0549 118 869 RAD5 or RAD16-like Gene Family AT1G05120 64.774 0.0 1024
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi07g0549 SNF2_N 4.2e-55 CL0023