Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0546 ATGGCAATGAAGTTCGTGGCGCTGTGTAAAAGGAAGAGTCTCTTCCCGCCGTTTCATTTATACTTTATAGTCTCCATCACTCACTCACTCATTCCACATCATTCCCTTTACCATTCTTGCTTCTCGTCTGATTCAAACGCTGAGAACCAGTCTTCTTTAGCCGCTTCAATGGAGCTTCGTTCTCGTAGGCGACTTCTTCCTCCTAATACTGCTGCTCATGATGCAAGAAATGAACAACCACCCGGCGATGCCTCTGGAAGAGCTCAAACTGCTAGCCATTCTGGCAATAACGCTAATAATGTCTCTTCTGATTCACATTCCAACTTTGAAGATGAAGAAGCTTCTCGCTTCTCTCTAGACTTAAACAAAGAACCTACTCCAAGCTCTCGCCCTTCTGATGAGGCAGATGGCAACTCTGATTCATCCGGAGGAGGAAAGAAAAGGAGAAAAGTTAGCTCAAGATATGGAGAGTCCAGTCAGAATATGGGAATGTTGGAGCTTGGAGACAATGATGGACCCCCAAGAGTCCAGCAGCAATCAATTGACCATGATTTGGTTAGCCCAAAGGACAAGAAAAAAACAAAAAGAGGAAGAAGAAAAGGTTCAAAGCCAGTGTTGTTGTGGCAGACGTTGGAAGAGCAGAACGAAAGATTTATTGACGCAAATTTATTAAAGGATATTGAATTGGATCAACAGGATGAACAAATAAGTGAAACTGCTGAGGCTTCCTCTGACTTTACCGTGCCATTACTAAGATATCAAAAAGAATGGCTAGCATGGGCTTTGAAACAGGAGAATTCTGACATTAGGGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCCAGCGTGAAATCCGGAAAATGGCTTGTGAACCAAATGAAACATCCTCCTTGCCAGGTGCATTTACTGCCATGCTTGAGTTAAAGGGAACGCTTGTTATTTGTCCTTTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTGTGAAAGGAAGCACTAAGGTGCTAATTTATCATGGGGCCAAGAGATGGAAGTTTAGGGAAGAGATCTCAGAGTATGATTTTGTAATAACTACATACTCAACAGTTGAATCTGAGTACAGGAAGTATATGATGCCTCCGAAGTACCAGTGCCCAGATTGCGGCAAACGTATCAACCAGGGGAAGATACGTTTCTTGCAAATAGTTCCTTATTCCTATTACTTCTGCAAGGACTGTGATTGCAGGATTCTTGACCGCTGATATGTTCGATCAAATACTTTGACGAATAGTTATGCTCATATATTTGAACTCCTGACCAGACTTCGGCAGGCTGTTGATCATCCATACCTTGTGTTATATTCTCGAGATGCATCATTAGAAGCTGGGGTTGAAGTTAACAATGACGAAGTTGAACAACAATGTGGCCTTTGTCATGACCCAGTAGAAGATCATGTGGTTACCTCATGTGGACACATCTTTTGTGAGCCATGCTGGATAAACTTCTCTGCTTCCTTGGAGCAAGTGACTTGTCCTTCATGCCCCAAATTACTTACTGTTGATTTTACTTCTAAAAATGTTGTTGGGGATCTGTCTAGAAAAACAACATTAAAGGATTTCAAATCCTCAAGCATTTTATATAGAGTTCGGCTTGAGGACTACCAGACAAGTACTAAAATAGAGGCATTGAGAGAAGAAATTCGATTTATGATAGAAAGGGATGGCTCTGCAAAAGCGGTTGTTTTTAGCCAGTTCACTTCATTCTTGGACCTCATAGAGTTCTCCCTGATGAAGTCTGGTGTGTCTTGCGTTCAACTGAATGGAAGAATGTCATTAAATGCTCGGGATGCAGCCATTAAGAAATTCACTGATGAGCCAGAATGCAGAATTTTTCTCATGAGCTTGAAAGCTGGTGGCGTTGCCCTCAATTTGACTGTAGCATCACATGTTTTCATAATAGACCCTTGGTGGAACCCAGCCTTAGAGCGTCAGGCTCAAGATAGAATTCACCGAATAGGGCAATATAAACCTATCAGGTGCTACTTCTTACATTATAACACTCTTAAGCCTGAAGTAGGCATTAGGCAACATAAAGTATCTGACTTTGTTGTGTTTCCTTGGTCAGAATTGTGA 2154 0.4206 MAMKFVALCKRKSLFPPFHLYFIVSITHSLIPHHSLYHSCFSSDSNAENQSSLAASMELRSRRRLLPPNTAAHDARNEQPPGDASGRAQTASHSGNNANNVSSDSHSNFEDEEASRFSLDLNKEPTPSSRPSDEADGNSDSSGGGKKRRKVSSRYGESSQNMGMLELGDNDGPPRVQQQSIDHDLVSPKDKKKTKRGRRKGSKPVLLWQTLEEQNERFIDANLLKDIELDQQDEQISETAEASSDFTVPLLRYQKEWLAWALKQENSDIRGGILADEMGMGKTIQAIALVLAQREIRKMACEPNETSSLPGAFTAMLELKGTLVICPLVAVTQWVSEIDRFTVKGSTKVLIYHGAKRWKFREEISEYDFVITTYSTVESEYRKYMMPPKYQCPDCGKRINQGKIRFLQIVPYSYYFCKDCDCRILDRXYVRSNTLTNSYAHIFELLTRLRQAVDHPYLVLYSRDASLEAGVEVNNDEVEQQCGLCHDPVEDHVVTSCGHIFCEPCWINFSASLEQVTCPSCPKLLTVDFTSKNVVGDLSRKTTLKDFKSSSILYRVRLEDYQTSTKIEALREEIRFMIERDGSAKAVVFSQFTSFLDLIEFSLMKSGVSCVQLNGRMSLNARDAAIKKFTDEPECRIFLMSLKAGGVALNLTVASHVFIIDPWWNPALERQAQDRIHRIGQYKPIRCYFLHYNTLKPEVGIRQHKVSDFVVFPWSEL 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0546 717 MobiDBLite consensus disorder prediction 52 201 - -
Mibi07g0546 717 SMART ultradead3 246 481 IPR014001 -
Mibi07g0546 717 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 426 687 - -
Mibi07g0546 717 SUPERFAMILY RING/U-box 477 528 - -
Mibi07g0546 717 MobiDBLite consensus disorder prediction 140 154 - -
Mibi07g0546 717 Pfam Helicase conserved C-terminal domain 566 680 IPR001650 -
Mibi07g0546 717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 263 453 IPR014001 -
Mibi07g0546 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 551 IPR013083 -
Mibi07g0546 717 Gene3D - 221 408 IPR038718 -
Mibi07g0546 717 Pfam SNF2-related domain 264 382 IPR000330 GO:0005524|GO:0140658
Mibi07g0546 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 383 IPR027417 -
Mibi07g0546 717 Pfam Zinc finger, C3HC4 type (RING finger) 482 521 IPR018957 GO:0046872
Mibi07g0546 717 CDD SF2_C_SNF 559 690 - -
Mibi07g0546 717 SMART helicmild6 597 680 IPR001650 -
Mibi07g0546 717 MobiDBLite consensus disorder prediction 83 105 - -
Mibi07g0546 717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 562 717 IPR001650 -
Mibi07g0546 717 ProSiteProfiles Zinc finger RING-type profile. 482 521 IPR001841 -
Mibi07g0546 717 CDD DEXDc_SHPRH-like 250 434 - -
Mibi07g0546 717 Gene3D - 418 695 IPR027417 -
Mibi07g0546 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 693 IPR027417 -
Mibi07g0546 717 MobiDBLite consensus disorder prediction 121 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0546 Mibi-ChrMibi07 6585932 6592395 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0546 429 710 RAD5 or RAD16-like Gene Family AT1G05120 66.784 7.85e-128 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi07g0546 SNF2_N 2.1e-25 CL0023