Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mibi07g0518 | ATGAAATCCCATACCACGGGCACTGCTTCGGAGTCGAAGCCCGCGAATCAAATGAAGCCTTCTCCAGCTAAAACACAAGTGGCAAAACCAGTGAGCTTCGCTGCCTTTTTCGCCGTTGCTGGAGGCCAAGATAGTGCAGGGAAGAGGAAAAACAAAAAAGATGAAAAAGAGGCACAGGAGCTTCCTGCCAAAAGAAAGAATCCCAAGGACAGTGAGGACTTGCAGAAACCTCTTCCCAAAAAAATTCATTTAGATGATGAAGATGACGACTCTGCCTTGCTCGCATCTCAAAGGAGATCAGTTGATACCACCCCAGCAAAAAAATTGAAGCGTGAATCTGGTAGGGAAATTCCACTTAAGTCTCCTGATATGGAAAATAGTGATGAGGATGATGTTAAAGATGATGTATCAACCATTAAATCTGGTGGAAGGAGACGTGGAGGAAGAGGAGCACCTGCCCAATCATCTAGTGGACGGGGTAGAGGGGGTGGAAGGGGTGGGTTCATGAACTTTGGCGAAAGAAAAGATCCTCCCCACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTGATTGCTTGGCTGGTTTGACTTTTGTCATCAGTGGAACATTGGACAGTTTGGAACGAGAAGAAGCGGAAGATTTGATTAAACGCCATGGTGGTCGTGTGACTGGATCAGTCAGCAAAAAAACGAATTATCTTTTATGTGATGAAGATATTGGAGGTCGTAAATCTTCAAAAGCAAAAGAGCTGGGGTTTCTCACGGAGGATGGGTTGTTTGACATGATTCTTGCATCAAAACCTGCAAAGGCTCCTCCACAGGAAGAATCAAAAAAATTGGTGAATAAGGTTGTTGCTACCCAGTCAAAAAGTCCTCAGAAAGCTGGAGTCAAGGTCTCCCAACCTTTAGGCTCGGCTTCAGCTCCAGTGAAGCCAAAGACAGAAAGTTCTGTACAGTCTTCTTTCATGTGGACAGAGAAGTATCGACCCAAAGTTCCAAATGACATAGTAGGAAATCAGTCCCTTGTTAAACAGCTTCATGATTGGTTGGCACATTGGAATGAACAATTTCTTGACAGTGGAAAGAAAAAGGGAAAAAAGCAAAATGACAATGGTTCAAAAAAAGCTGTCTTACTTAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCTGTAAGATGCTTGGTTTCCAAGCTATAGAGGTTAATGCTAGTGACAGCCGTGGAAAGGCTGATAGCAAAATTGGTAAAGGGATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTAACCAACGAAGCGTTGGATGCTAAAACAGATGGGGTGAAGCATTCGAAAACTGTGCTCATCATGGATGAGGTTGATGGCATGTCAGCAGGTGATCGGGGCGGCATTGCTGATCTTATTGGTCCTGGCAATGCTGTTCTTGTCCGTTTTGTGATTGAGTTTAATGAGCTCAAAATGGCAAAGAGGTTGTTGCAAATTGCGAAAGCTGAAGGGCTTCAAGTTAATGAGGGAGAACGGAATTATAATCGGTTTGGTGGTTGGCTGGGTAAAAATTCAACAATGGGCAAAAACTATAGGCTTTTGGAAGATATGCGTGTTCACATTCTTGCTTCTCGTGAATCCTGTCCAGGAAGGGAAACTCTCCTTTTGGATTATCTTAAACCACTTCTTCAGCATTTAACAGAACCATTGCGGGCCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAACATGTACTCAATCAGCCAAGAGGATTTTGATACTATTGTCGAACTATCAAAATTCAAGGGTCGTCCAAATCCGCTAGATGGCATTGCACCTGCTGTTAAATCTGCACTTGCAAAAGCTTACAAAGAAGAAACCATGCAAGTACAATTGGATTTGAAGGGAACAGGAAGCTCAAGTGCCAAGAAGACACCAGCTGGAAGAGGTAGAGGTGGTTCTGCGTCGGCTGGGAGGGGGGTGGTCAAGCTTCAAGGGGTGGGGCGAAAAGAAAGAGGTGAAAAGGCAATGTGA | 2046 | 0.4423 | MKSHTTGTASESKPANQMKPSPAKTQVAKPVSFAAFFAVAGGQDSAGKRKNKKDEKEAQELPAKRKNPKDSEDLQKPLPKKIHLDDEDDDSALLASQRRSVDTTPAKKLKRESGREIPLKSPDMENSDEDDVKDDVSTIKSGGRRRGGRGAPAQSSSGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGFLTEDGLFDMILASKPAKAPPQEESKKLVNKVVATQSKSPQKAGVKVSQPLGSASAPVKPKTESSVQSSFMWTEKYRPKVPNDIVGNQSLVKQLHDWLAHWNEQFLDSGKKKGKKQNDNGSKKAVLLSGTPGIGKTTSAKLVCKMLGFQAIEVNASDSRGKADSKIGKGISGSNANSIKELVTNEALDAKTDGVKHSKTVLIMDEVDGMSAGDRGGIADLIGPGNAVLVRFVIEFNELKMAKRLLQIAKAEGLQVNEGERNYNRFGGWLGKNSTMGKNYRLLEDMRVHILASRESCPGRETLLLDYLKPLLQHLTEPLRALPKDEAVQKVVEFMNMYSISQEDFDTIVELSKFKGRPNPLDGIAPAVKSALAKAYKEETMQVQLDLKGTGSSSAKKTPAGRGRGGSASAGRGVVKLQGVGRKERGEKAM | 681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mibi07g0518 | 681 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 322 | 474 | IPR027417 | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 40 | 189 | - | - | |
| Mibi07g0518 | 681 | ProSiteProfiles | BRCT domain profile. | 188 | 263 | IPR001357 | - | |
| Mibi07g0518 | 681 | FunFam | Replication factor C subunit 1 | 321 | 498 | - | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 46 | 95 | - | - | |
| Mibi07g0518 | 681 | SUPERFAMILY | BRCT domain | 188 | 265 | IPR036420 | - | |
| Mibi07g0518 | 681 | FunFam | Replication factor C subunit 1 | 164 | 265 | - | - | |
| Mibi07g0518 | 681 | PIRSF | RFC1 | 507 | 656 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Mibi07g0518 | 681 | PIRSF | RFC1 | 2 | 475 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Mibi07g0518 | 681 | PIRSF | RFC1 | 486 | 511 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Mibi07g0518 | 681 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 507 | 542 | IPR008921 | GO:0003677|GO:0006260 | |
| Mibi07g0518 | 681 | SMART | AAA_5 | 373 | 573 | IPR003593 | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 291 | 316 | - | - | |
| Mibi07g0518 | 681 | Pfam | BRCA1 C Terminus (BRCT) domain | 190 | 253 | IPR001357 | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Mibi07g0518 | 681 | CDD | AAA | 370 | 473 | - | - | |
| Mibi07g0518 | 681 | Gene3D | BRCT domain | 165 | 264 | IPR036420 | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 636 | 681 | - | - | |
| Mibi07g0518 | 681 | CDD | BRCT_RFC1 | 188 | 263 | - | - | |
| Mibi07g0518 | 681 | Gene3D | - | 322 | 501 | IPR027417 | - | |
| Mibi07g0518 | 681 | Pfam | ATPase family associated with various cellular activities (AAA) | 377 | 463 | IPR003959 | GO:0005524|GO:0016887 | |
| Mibi07g0518 | 681 | Pfam | Replication factor RFC1 C terminal domain | 514 | 628 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 103 | 142 | - | - | |
| Mibi07g0518 | 681 | MobiDBLite | consensus disorder prediction | 172 | 187 | - | - | |
| Mibi07g0518 | 681 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 17 | 473 | - | - | |
| Mibi07g0518 | 681 | SMART | BRCT_7 | 190 | 266 | IPR001357 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mibi07g0518 | Mibi-ChrMibi07 | 6268528 | 6273881 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mibi07g0518 | 507 | 629 | Core DNA Replication Machinery Family | AT5G22010 | 69.919 | 6.94e-51 | 188 |