Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0361 ATGGACATGGATGCCTCCACAGAGCAGCTTGTGGGGTCTACCAAGAGAAAACGCACCAAACGCCACAGGCCTTTCTCCGTCACCCTGTCACACTCCACCTCTTCCTCTTTTTCTGCCGATGATCATTATTCCACCTCCTTCAATTCCTCTGCCTCCACCACCGCCGATGATGATGAAGAACAAGACATGGCTAATTGTTTAATCCTCTTGGCTCAAAGTGGTGACCCCCCTCTCAATAAAGAGCCTCCCATCACCAAAAATATCAGTGGATTCTATGTTTACGAGTGTAAAACTTGTAACAAATCTTTCCCTTCCTTTCAAGCCTTGGGTGGACACAGAGCAAGCCACAAGAAACCCAAGGTTGAAGCCCCACAAGTTTCTGGTTTTGAGGTTGAAGAAGCAGGGGAAGATAAGTTCAAAAGTGACTCTCAGATTTCTGTTCAATTAGCGAGCAATATTAAGGTCTTTCATGGCAACAAAGGGAAGATTCATGAGTGTTCGATTTGTGGTTCAGAGTTTACATCTGGTCAAGCATTGGGTGGTCATATGAGGAGGCATAGAGCATCGATGAATACCACTGCTGTGGAAGTGAAGCCTAGGAATGTTCTTGGATTGGATCTTAATTTGCCGGCGCCGGAATCTCTTGTGATGTCTGCTCCGGCTTTGGTGGGATGCCATTACTGA 684 0.4635 MDMDASTEQLVGSTKRKRTKRHRPFSVTLSHSTSSSFSADDHYSTSFNSSASTTADDDEEQDMANCLILLAQSGDPPLNKEPPITKNISGFYVYECKTCNKSFPSFQALGGHRASHKKPKVEAPQVSGFEVEEAGEDKFKSDSQISVQLASNIKVFHGNKGKIHECSICGSEFTSGQALGGHMRRHRASMNTTAVEVKPRNVLGLDLNLPAPESLVMSAPALVGCHY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0361 227 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Mibi07g0361 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Mibi07g0361 227 PANTHER ZINC FINGER PROTEIN ZAT5 23 213 - -
Mibi07g0361 227 SUPERFAMILY beta-beta-alpha zinc fingers 93 186 IPR036236 -
Mibi07g0361 227 ProSiteProfiles Zinc finger C2H2 type domain profile. 164 191 IPR013087 -
Mibi07g0361 227 SMART c2h2final6 164 186 IPR013087 -
Mibi07g0361 227 SMART c2h2final6 94 116 IPR013087 -
Mibi07g0361 227 Pfam C2H2-type zinc finger 164 188 - -
Mibi07g0361 227 Pfam C2H2-type zinc finger 93 119 - -
Mibi07g0361 227 ProSitePatterns Zinc finger C2H2 type domain signature. 166 186 IPR013087 -
Mibi07g0361 227 MobiDBLite consensus disorder prediction 26 54 - -
Mibi07g0361 227 Gene3D Classic Zinc Finger 91 186 - -
Mibi07g0361 227 MobiDBLite consensus disorder prediction 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0361 Mibi-ChrMibi07 4455074 4455757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0361 15 227 C2H2 Transcription Factor Family AT2G28200 41.971 1.27e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi07g0361 zf-C2H2_6 1.4e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi01g0214 01 2088383 2089189 Mibi07g0361 07 4455074 4455757 CCT
Mibi01g0214 01 2088383 2089189 Mibi07g0361 07 4455074 4455757 ECH
Mibi07g0361 07 4455074 4455757 Mibi07g0361 07 4455074 4455757 ECH