Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0277 ATGGCGGAAACTGCAAATCCTGATATTCCCCTTTCTCCCTCTAAAACCCTAAACCCTTCTCATTCATCTCCGTCTCCCGCCGCCCAATCTCCCAACGACGTCGTTTCCGGCGACAAACGGAAGCGCGAGGAATCAGAATCAGAGATCTCAGATCCTTCCCTCAATCCCTTGTGGAAAACCAGCCTCTGTTCTTATTTCAGGCGACAAGATAGCTCCTGTAGCCACGGGAGTGAGTGTCGCTATGCCCACGGCGAGGAGGAGCTTCGGCCGAGGCCTGATAATACGTGGGACCCAACGTCGGAGCGGGCGAAGAAGGCGATGAAATCTGAAACGGGCGAGAAGTGTGTGGTTTCGTTGGGTGTAATGATGACTGAGGCTGTGGTTGATGATGCTGATGGTGAGGATGATGTTGATTCCAATCATGCTCTTAGCAAATGCTTGGTGCATTTGCCTAGGAAGTGGGGTTCGGATAACTTGAGGGGGTTTCTCAATCAAGAGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGCATGCTGGTAGGATTTGTCACTTTTGAAGATCAAGAACAGTTGAAGAGCTCAACGAAGGAGCTGGAGGGCAAATTAATTGGTAGCAAAAGTTTAAAAGTTGCGGATGTCATCCCTCGAACATTTGAAAAGAAAAGTTACTCAAATGTCACTCTTTGTGCAGAATCTGCACATAATGCAGATGCTGCTTTAGCTAAGGAGAATACGGATGAGAACAGGGATGGTGAGACAAATGTTGCAAATTTGGTGGTTGGTGATTCCATGCAGAAGACAAGAAGCCTCCAAGATGTAGTAACTCCTCTTGCTCATATGGCCTATGCTGATCAGTTAGAGCACAAGAAAGGCTCTCTCACACAGATTCTCAAAAGACTTACCAGAAATGCTCGTAAAGCTTGTCCAAGTGGCGTTTCTCTTCCCGAGTGGATTCTTAAGTCTAGGGATATAGGTGGTCTTCCTTGCAAACTAGAAGGTATTATTGGATCACCAAGGGTAAATGGATATCGCAACAAGTGTGAATTTTCTGTTGGATATTCTGTAGAAGGAAAAATAACAGTAGGATTTATGCTTGGAAATTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTGGACTGCTCCAATGTTTCAACAATTGCTCTCCAATATGCTTCTATCTTTCAGGAATTTCTACAGCATTCACAGTTACCAGTCTGGAACAGATTTAAGAATAGCGGGTTTTGGCGTCAATTGACAGTTCGAGAAGGAAGGGCAAGTGGGGAGGTTACTGATGCTGAAGAATTTGGGGGCATTGCAGAGGTCATGCTTATGGTGCAGGTTTCTACAACGGGCTTTGATAATGAGCTAGTAACTGGTGAATTTGATACACTTGCTCAAGCATTTGTTGCAGGATCTAATGCATGTTCTCCATCATTGCCTCTCACGGCTCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCCCCCCTGCGGTCACTTCTTGGTCCTAAAGCAGTTGATGATCAAATAAATGAAAAAAATGGCTCCGTGGATGTCAGGATCCATGATTATATCAGCAATCTCAAGTTTTCTATATCTCCGACTGCATTTTTCCAGGTCAACACTTTAGCTGCCGAGAAATTGTACTCACTTGCTGGAGATTGGGCATGCCTTGGTCCTGATACATTGCTATTTGATATTTGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGTGTTGGTATGGTGATTGGCGTTGAAATGAATGCTTCTGCCGTATCTGATGCTCAAAGAAATGCTGAGATTAATGGTATAAAGAACTGTAAATTTATTTGTGCGAAGGCTGAGGATGTCATGGGATCTTTGTTAAAGGAGCACCTAAACAAGCCTAAGGAACAAGTTAATGTACCTAGTATCTGTGGAACTGATGGGGAAATTTCTGAGGGGAGTATACGACATGAAAGCAACAATGGGGAACAAGAATCTCATTGTTCCGAAAATGGCAGGCAAGAAGATGAAATTGAAGCTCAGAGAAGGAGAGATCCTGAAAATGGAAACTCTTTGATGCAACAATTTAAAAATGTTGTTGCTATCGTTGACCCTCCACGTGCTGGACTCCATCCAACTGTGATCAAAGCTCTGAGGACTAATCAAGGACTGCGGAGGCTTGTCTACATATCCTGTAATCCTGATAGTTTGGTGGCAAATGCTATTGAGCTTTGCACACCATCTCCCGAGAAAATGGAAAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTCTTGCAAGACACAGAGCCAAGTCTATGCCGATCTCAGAGGCCTTCCAGCCCATTAAAGCCATGGCCGTTGATCTATTCCCACACACTGAACACTGTGAGCTGGTGATGCTCCTCGAGAGATAG 2445 0.4474 MAETANPDIPLSPSKTLNPSHSSPSPAAQSPNDVVSGDKRKREESESEISDPSLNPLWKTSLCSYFRRQDSSCSHGSECRYAHGEEELRPRPDNTWDPTSERAKKAMKSETGEKCVVSLGVMMTEAVVDDADGEDDVDSNHALSKCLVHLPRKWGSDNLRGFLNQEGIPFKSAKKKKGMLVGFVTFEDQEQLKSSTKELEGKLIGSKSLKVADVIPRTFEKKSYSNVTLCAESAHNADAALAKENTDENRDGETNVANLVVGDSMQKTRSLQDVVTPLAHMAYADQLEHKKGSLTQILKRLTRNARKACPSGVSLPEWILKSRDIGGLPCKLEGIIGSPRVNGYRNKCEFSVGYSVEGKITVGFMLGNFREGVTAVEEAVDCSNVSTIALQYASIFQEFLQHSQLPVWNRFKNSGFWRQLTVREGRASGEVTDAEEFGGIAEVMLMVQVSTTGFDNELVTGEFDTLAQAFVAGSNACSPSLPLTALVVQDHQGISNVAPADAPLRSLLGPKAVDDQINEKNGSVDVRIHDYISNLKFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGVEMNASAVSDAQRNAEINGIKNCKFICAKAEDVMGSLLKEHLNKPKEQVNVPSICGTDGEISEGSIRHESNNGEQESHCSENGRQEDEIEAQRRRDPENGNSLMQQFKNVVAIVDPPRAGLHPTVIKALRTNQGLRRLVYISCNPDSLVANAIELCTPSPEKMEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLER 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0277 814 MobiDBLite consensus disorder prediction 654 694 - -
Mibi07g0277 814 ProSitePatterns RNA methyltransferase trmA family signature 1. 709 741 IPR030390 -
Mibi07g0277 814 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 274 814 IPR010280 GO:0006396|GO:0008173
Mibi07g0277 814 CDD AdoMet_MTases 573 627 - -
Mibi07g0277 814 SUPERFAMILY RNA-binding domain, RBD 149 219 IPR035979 GO:0003676
Mibi07g0277 814 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 85 IPR000571 GO:0046872
Mibi07g0277 814 CDD RRM_SF 146 211 - -
Mibi07g0277 814 ProSiteProfiles Zinc finger C3H1-type profile. 57 86 IPR000571 GO:0046872
Mibi07g0277 814 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 276 814 IPR029063 -
Mibi07g0277 814 MobiDBLite consensus disorder prediction 9 32 - -
Mibi07g0277 814 MobiDBLite consensus disorder prediction 656 691 - -
Mibi07g0277 814 SUPERFAMILY CCCH zinc finger 56 90 IPR036855 GO:0046872
Mibi07g0277 814 MobiDBLite consensus disorder prediction 1 53 - -
Mibi07g0277 814 MobiDBLite consensus disorder prediction 86 109 - -
Mibi07g0277 814 Gene3D - 52 91 - -
Mibi07g0277 814 Coils Coil 284 304 - -
Mibi07g0277 814 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 75 814 IPR045850 -
Mibi07g0277 814 Pfam tRNA (Uracil-5-)-methyltransferase 699 749 IPR010280 GO:0006396|GO:0008173
Mibi07g0277 814 Pfam Methyltransferase domain 571 630 IPR025714 -
Mibi07g0277 814 Gene3D Vaccinia Virus protein VP39 511 813 IPR029063 -
Mibi07g0277 814 SMART c3hfinal6 57 85 IPR000571 GO:0046872
Mibi07g0277 814 MobiDBLite consensus disorder prediction 35 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0277 Mibi-ChrMibi07 3478690 3484071 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi07g0277 tRNA_U5-meth_tr 4.1e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g0277 07 3478690 3484071 Mibi07g0277 07 3478690 3484071 ECH