Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0163 ATGCTGGAAGCTGCCATGGAGGAAGATAAAGCAGCTATAGTGAAAAGTTCGATTGACTTGATAAATGAGATAGCTGCGATCTCGGATTATAGGAGTACGGTCAAGAAGCAGTACTGCAATTTGGCGAGAAGGTTGAAATTGTTGATTCCAATGTTTGAAGAAATTAGGGACAGCAAAGAGACGTCTCCTGAAGAGACCTTGAAAGCTTTGATTTCCTTCAGGGAAGCTTTAGAATCGGCCCAACAGCTTCTCAGATTTGGGAGCGAAGGAAGCAGGATTTATATGGTCTTAGAGAGGGAGCAACTTATGAAACAATACCACGAGGTGACGGCTCAATTAGAACAAGCCTTGAGTGGAATTTCATATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTGGCACAATTCAGAAGAGCCAAAGCAAGGGTTGATGCACCTGATGATGAGTTGTACGAGGATATCTTGTCACTTTATGATAAGAGCAGTGATGCGGCAACAAATCCAGCTGTTCTAAGGAGATTAGCTGAAAAATTGCAATTGATGGGAATATCTGATCTTACACAAGAGTCACTAGCTTTGCATGAAATGGTGACAGCAAGTGGTGGAGATCCGGGGGCAAGTATTGAGAAGATGTCTATGTTATTGAAAAAAATAAAAGATTACGTACAAACAGAGAATCTAGTCATGGATGATACTGAAGGTGGAAAAGGCCTTTCTTCTAGCAGTTGCAGCCATGGGATGAGTGAAAAGGGTCATCAAGCCCCTATTATCCCTGACGATTTTCGATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGCTCTTGTATTGAGAAGTGGTTGGAAGCAGGGCATGGAACCTGTCCGAAAACACAGCAGACACTTACTAGCACTGTTCTCACGCCCAATTATGTCTTACGAAGCCTGATAGCACAATGGTGTGAAGCCAACGGCATGGAGCCTCCAAAACGACCCAGTAGTTCCCGACCTAGTAAGTCAGCATCTACCTGCTCACCAGCTGAGCGTAGTAAGATTGAAAATCTTCTCCGTAAGCTTACATCTGGTAGTCCTGAAGACCAGAGATCAGCGGCAGGTGAGATCCGTCTGTTAGCAAAACGAAATGCGGATAACCGTGTAGCCATTGCTGAGGCTGGCGCAATACCACTCCTTGTTGGCCTTCTCTCTATACCTGACTCCCGAACTCAAGAGCATGCTGTAACAGCTCTTTTAAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCATATCTTCCGGGGCAGTTCCTGGCATAGTTCATGTGCTCAGGAAGGGCAGCATGGAAGCTCGGGAAAATGCAGCAGCCACACTCTTCAGCCTCTCAGTCGTAGATGAAAATAAGGTTACTATTGGATCCTCAGGAGCCATCCCACCACTAGTGACACTGCTGAGCGAGGGCACCCAAAGGGGTAAAAAGGATGCTGCAACGGCGCTCTTCAATTTGTGCATATACCAGGGCAACAAGGGAAAAGCAGTAAGGGCAGGTGTTGTTCCTACACTGATGCGACTGCTGACAGAACACGGTGGGGGAATGGTTGATGAAGCATTGGCCATATTGGCAATACTGGCCAGTCATCCAGAAGGGAAGGTTGCAATTGGTGCTGCGGAGGCCGTACCAGTTTTGGTGGGGGTCATTGGCAATGGATCCCCAAGAAACAAAGAGAATGCAGCTGCCGTTTTAGTACACCTTTGTTCCGGAGATCAGCAATATATAGTGCAAGCTCAAGATCTTGGGGTGATGGGTCCATTGGTGGATCTTGCTCAAAACGGTACAGACAGAGGCAAAAGAAAGGCTGCACAATTACTTGACCGAATGAGCAGATTCCTTGAGCAGCAGCAGCAGCAGCAGGAAGTTCAAACACAATCTGAAGTGCTAGTTCAGAATGAGGATATACAGCCCCCTTCTATTACTGACCTTCTTGATAGTTGA 2016 0.4573 MLEAAMEEDKAAIVKSSIDLINEIAAISDYRSTVKKQYCNLARRLKLLIPMFEEIRDSKETSPEETLKALISFREALESAQQLLRFGSEGSRIYMVLEREQLMKQYHEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKARVDAPDDELYEDILSLYDKSSDAATNPAVLRRLAEKLQLMGISDLTQESLALHEMVTASGGDPGASIEKMSMLLKKIKDYVQTENLVMDDTEGGKGLSSSSCSHGMSEKGHQAPIIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGMEPPKRPSSSRPSKSASTCSPAERSKIENLLRKLTSGSPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSIPDSRTQEHAVTALLNLSICENNKGSIISSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEHGGGMVDEALAILAILASHPEGKVAIGAAEAVPVLVGVIGNGSPRNKENAAAVLVHLCSGDQQYIVQAQDLGVMGPLVDLAQNGTDRGKRKAAQLLDRMSRFLEQQQQQQEVQTQSEVLVQNEDIQPPSITDLLDS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0163 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Mibi07g0163 671 FunFam RING-type E3 ubiquitin transferase 537 654 - -
Mibi07g0163 671 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Mibi07g0163 671 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Mibi07g0163 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 336 IPR013083 -
Mibi07g0163 671 SUPERFAMILY RING/U-box 263 339 - -
Mibi07g0163 671 Gene3D - 347 668 IPR011989 -
Mibi07g0163 671 MobiDBLite consensus disorder prediction 340 357 - -
Mibi07g0163 671 ProSiteProfiles U-box domain profile. 262 336 IPR003613 GO:0004842|GO:0016567
Mibi07g0163 671 CDD RING-Ubox_PUB 267 309 IPR045210 -
Mibi07g0163 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Mibi07g0163 671 SUPERFAMILY ARM repeat 361 645 IPR016024 -
Mibi07g0163 671 SMART Ubox_2 266 329 IPR003613 GO:0004842|GO:0016567
Mibi07g0163 671 FunFam RING-type E3 ubiquitin transferase 263 336 - -
Mibi07g0163 671 FunFam RING-type E3 ubiquitin transferase 346 497 - -
Mibi07g0163 671 PANTHER U BOX DOMAIN-CONTAINING 33 635 - -
Mibi07g0163 671 FunFam RING-type E3 ubiquitin transferase 10 123 - -
Mibi07g0163 671 Gene3D - 9 123 IPR036537 GO:0007166
Mibi07g0163 671 MobiDBLite consensus disorder prediction 333 357 - -
Mibi07g0163 671 Pfam U-box domain 263 333 IPR003613 GO:0004842|GO:0016567
Mibi07g0163 671 MobiDBLite consensus disorder prediction 238 257 - -
Mibi07g0163 671 SMART arm_5 513 553 IPR000225 GO:0005515
Mibi07g0163 671 SMART arm_5 390 430 IPR000225 GO:0005515
Mibi07g0163 671 SMART arm_5 596 636 IPR000225 GO:0005515
Mibi07g0163 671 SMART arm_5 431 471 IPR000225 GO:0005515
Mibi07g0163 671 SMART arm_5 472 512 IPR000225 GO:0005515
Mibi07g0163 671 SMART arm_5 554 594 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0163 Mibi-ChrMibi07 2267295 2271314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0163 6 671 U-box Gene Family AT3G46510 70.015 0.0 941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi07g0163 07 2267295 2271314 Mibi07g0163 07 2267295 2271314 ECH