Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0159 ATGGCGGACGCAGAGGATATTCAACCACTCGTCTGTGACAATGGGACGGGAATGGTTAAGGCTGGATTTGCCGGAGATGATGCTCCGAGGGCGGTGTTCCCGAGCATTGTGGGCCGTCCACGTCACACGGGAGTAATGGTTGGGATGGGCCAGAAAGATGCATACGTAGGGGATGAGGCCCAATCAAAGAGGGGTATATTAACGCTGAAATATCCAATAGAGCATGGAATAGTGAGTAACTGGGATGACATGGAGAAGATATGGCACCACACGTTCTACAATGAACTCCGTGTGGCACCAGAGGAACACCCTGTTTTGCTCACAGAGGCACCCCTCAACCCAAAGGCCAATCGTGAGAAAATGACCCAAATCATGTTCGAAACCTTCAACACCCCCGCCATGTATGTTGCCATCCAGGCCGTCCTCTCCTTGTACGCCAGTGGCCGTACTACCGGTATTGTCCTGGACTCTGGAGATGGTGTGAGCCATACCGTGCCAATATACGAGGGATATGCACTGCCACATGCCATTCTGCGTCTTGATTTAGCAGGGCGTGACCTGACTGATGCACTAATGAAGATCCTCACAGAGCGTGGCTATTCATTCACAACATCTGCTGAGCGTGAAATAGTGAGGGATGTGAAGGAGAAGCTGGCATACATAGCACTTGACTATGAACAAGAGCTTGAAACTGCAAAGACAAGTTCTGCTGTTGAGAAGAGCTATGAGTTGCCGGACGGACAGGTGATCACCATCGGAGCAGAGCGATTCCGGTGCCCTGAAGTACTGTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGGAATTCATGAGACAACTTATAATTCTATAATGAAGTGTGATGTTGATATAAGGAAGGACTTGTATGGTAACATTGTGCTCAGTGGTGGATCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATTACTGCTTTGGCCCCCAGCAGCATGAAGATCAAGGTGGTCGCCCCTCCGGAGAGGAAGTACAGTGTCTGGATTGGTGGCTCCATCTTGGCTTCTCTCAGCACTTTCCAACAGAAAGAAGTGATTACTGATTACCGCATTTTGCAATTCCGCCGTTTCACAAGGTTAAACCACCACACAGACCCGCGTTGGAGTCAGCGCAAAAGTCAAGCCTTCCAGTTTGGAAGCAAAATCAATCATAGAATCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCCACAATGCTTTCTCATCCATTCCTAACCTCATGAAGCTCTTGAATCCTTCTCTTCCTCCTCCTCAGAATCAGCAATTTTCCGTCACCGGAGATTCCTCCCATGGCTTCTCGCCGCCTCTCTCTCTGACTTCGCCCTCTTCCTTCCGGGAAGCCGCCACCGCATCTGAGCTTCCCATTCTCATGGCAGAATGTATTGAATCTGTGTACGTTGCCGTCGGAAAATCGGTGGATAAAGCTGTCCATTTGCTTCAATGGACTTTTGGCCGCTTTAGCAACTCACAGATTTGCATTCTCCATGTTCATCAACCTTCCTCTATGATCCCCACTCTTTTGGGGAAATTGCCTGCAACCCAAGCAAATCCTGAAGTCGTTTCTGCTTTTAGAAGAGAGGAAAGAGAACAGACCACGAGGCTCTTGGAAACTTACCTGAGCATTTGCAGTGCAGCTAAGGTTAAGGCAACCAGTGTGATAGGGGAAGCTGATCAAGTGCACAAAGGAATTGTTGATTTAATTATTAGTCAAGGTGTCACGAAGCTTGTTATAGGAGCAGTGCCTGAGAACCGCATGAAGGTGAAAAGGAGTTCCAGGAAAGCAAATTATGCTGCCAAGAATGCTCCCCCGTTTTGTGAGATATGGTTTATCCACAAAGGTAAACTCTTATGGACAAGAGAAGCTTCTGAAAATCCTTGTTCCCTGTCTTCACAATCTCAACCTGAGATTGCTGCTTCAGACAGATTGATGACTAGATCATTTCAATATGGTGAGAGTGAATTATTCCATGGATCAAATTCTGCCAGAATTGCATTCTGTACCGGAACTGGTAGTTGGTCTCATGGTGAAATCTTAGAAACAGATGCCACTTCCTCATCCAAATCATCTATCTGTACCAGTCACTGTTCTCCCCAAAATTCTACTGGGGGTTATTTAGAGACTTCTTCTGATGTTGAGGAAGATAGACTTCATACTCTACTTGTTGAAGCCAAAATAGAAGTCGAGGCTGCGAAAGAGAAGGGTTTAGTGGAGCTTTTGAAATGCGAAAGACTTGAAGCTGAAGCTATGGAGGCCATAAAGAAGGTCAATATGCTTGAATATGCTTATGCATGTGAAGTAAAGCTTAGAAAGGAAGCAGAGAATGCACTGCAAGCCGCAGTGCAGGAGCAACAAAAGCTCTTGGATGAGAGTGAAGAAGTTGCTTCTGTGCTACAGAGAACCATGAGAAATATTGCCCTTCTGGACAGTCGTGCACAGGAAGCAAACCGCAGGCATGATGAAGCTGCAGATGAGTTATTATTAATTCAAGCATCTATCTCAACCCTGTGGCACGAAAAGCAGCAGATCCGGAGACAAAAAATGGAAGCCCTCCGCTGGCTTGAGCGATGGAAAAGTCGGGGACATATTGGAGCTGCACAATGCCATGGGGTCATTGGATTTGCTGAAGAATTACCGGAGCTTGCAGAATTTTCACCTTCAGATCTTCAAAATGCTACTTGCAATTTTTCTGAGAGCTTTAAAATTGCACAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGCTGGGCAGAACAGTTGCTATAAGGAAGTTCCATCCACATAACATGCAAGGACTGGCGGAGTTTCAGCAAGAGGTTCGAGTTCTTGGTAGTCTCCAGCATCCTCACCTGTTGACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCACTGGTGTATGAGTACATACCGAATGGGAGTCTTCAAGACCTCCTATTTCGGAAAAACAATTCCCCTCTGACATGGAATAGCCGAGCACGTATGATTGCTGAAATTGCTAGCGCTCTTTGCTTTTTACACACTTCCAAACCTAAAACTATTGTCCATGGTGATCTAACCCCTGAAAGAATACTTCTTGACTCTGCACTCAGTTGCAAGATTTGCGAGTTTGGTTTCTGCAGACTGTTGACCGAGGAGTCACTCTATCGTCCTAGTTTCAGATTCAGCGCTGAGCTAAAAAGTACTTCTACATATACGGATCCAGAGTTTGAGAGGACTGGAATACTAACACCGAAGTCTGATATCTATTCATTTGGACTTATCATTTTGCAACTCCTCACTGGCAGGACTATACCAGTTGGGTTAGCAGGTGAAGTACGCAAGGCAGTATCGTGTGGAAAATTGTTATCAATTTTGGATTCTTCAGCTGGAGAATGGCCTCCAGCTGTGGCTACACGATTGATTGAACTGGGACTGCAATGCTGTCAGCTACAAGGCAGAGAAAGACCAGAGCTAACACCTACTCTGGTGAGGGAATTGGAGCAATTGCATGTTTCAGAAGACCGACCAGTGCCATCATTTTTCTTGTGTCCCATCCTTCAGGAAATAATGCATGATCCCCAGGTTGCAGCTGACGGATTCACTTACGAAGGGGAAGCCATACGTGAATGGCTGGCAAATGGTCATGAGACTTCTCCCATGACAAATTTAAAATTGAGTCACCTGCATCTGACACCCAATCATGCACTTCGTCTTGCAATCCAAGACTGGCTTTGCAAATCCTGA 3762 0.4631 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQKEVITDYRILQFRRFTRLNHHTDPRWSQRKSQAFQFGSKINHRIIFFFFFFFFFHNAFSSIPNLMKLLNPSLPPPQNQQFSVTGDSSHGFSPPLSLTSPSSFREAATASELPILMAECIESVYVAVGKSVDKAVHLLQWTFGRFSNSQICILHVHQPSSMIPTLLGKLPATQANPEVVSAFRREEREQTTRLLETYLSICSAAKVKATSVIGEADQVHKGIVDLIISQGVTKLVIGAVPENRMKVKRSSRKANYAAKNAPPFCEIWFIHKGKLLWTREASENPCSLSSQSQPEIAASDRLMTRSFQYGESELFHGSNSARIAFCTGTGSWSHGEILETDATSSSKSSICTSHCSPQNSTGGYLETSSDVEEDRLHTLLVEAKIEVEAAKEKGLVELLKCERLEAEAMEAIKKVNMLEYAYACEVKLRKEAENALQAAVQEQQKLLDESEEVASVLQRTMRNIALLDSRAQEANRRHDEAADELLLIQASISTLWHEKQQIRRQKMEALRWLERWKSRGHIGAAQCHGVIGFAEELPELAEFSPSDLQNATCNFSESFKIAQGGYGCIYKGEMLGRTVAIRKFHPHNMQGLAEFQQEVRVLGSLQHPHLLTLLGVCPEAWSLVYEYIPNGSLQDLLFRKNNSPLTWNSRARMIAEIASALCFLHTSKPKTIVHGDLTPERILLDSALSCKICEFGFCRLLTEESLYRPSFRFSAELKSTSTYTDPEFERTGILTPKSDIYSFGLIILQLLTGRTIPVGLAGEVRKAVSCGKLLSILDSSAGEWPPAVATRLIELGLQCCQLQGRERPELTPTLVRELEQLHVSEDRPVPSFFLCPILQEIMHDPQVAADGFTYEGEAIREWLANGHETSPMTNLKLSHLHLTPNHALRLAIQDWLCKS 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0159 1253 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 486 599 - -
Mibi07g0159 1253 PRINTS Actin signature 63 85 IPR004000 -
Mibi07g0159 1253 PRINTS Actin signature 117 130 IPR004000 -
Mibi07g0159 1253 PRINTS Actin signature 28 37 IPR004000 -
Mibi07g0159 1253 PRINTS Actin signature 51 62 IPR004000 -
Mibi07g0159 1253 PRINTS Actin signature 142 161 IPR004000 -
Mibi07g0159 1253 PRINTS Actin signature 238 254 IPR004000 -
Mibi07g0159 1253 CDD STK_N 477 627 - -
Mibi07g0159 1253 Gene3D - 10 358 - -
Mibi07g0159 1253 CDD RING-Ubox_WDSUB1_like 1187 1228 - -
Mibi07g0159 1253 Coils Coil 755 775 - -
Mibi07g0159 1253 SUPERFAMILY RING/U-box 1180 1252 - -
Mibi07g0159 1253 SMART actin_3 7 371 IPR004000 -
Mibi07g0159 1253 ProSiteProfiles U-box domain profile. 1182 1253 IPR003613 GO:0004842|GO:0016567
Mibi07g0159 1253 SMART Ubox_2 1186 1249 IPR003613 GO:0004842|GO:0016567
Mibi07g0159 1253 Coils Coil 783 838 - -
Mibi07g0159 1253 Gene3D Transferase(Phosphotransferase) domain 1 982 1182 - -
Mibi07g0159 1253 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mibi07g0159 1253 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Mibi07g0159 1253 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mibi07g0159 1253 Pfam Actin 5 359 IPR004000 -
Mibi07g0159 1253 FunFam Actin, alpha skeletal muscle 3 156 - -
Mibi07g0159 1253 Gene3D Phosphorylase Kinase; domain 1 886 981 - -
Mibi07g0159 1253 PANTHER OS02G0152300 PROTEIN 478 1247 - -
Mibi07g0159 1253 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mibi07g0159 1253 FunFam Actin, alpha skeletal muscle 36 73 - -
Mibi07g0159 1253 Gene3D - 140 340 - -
Mibi07g0159 1253 SUPERFAMILY Protein kinase-like (PK-like) 893 1169 IPR011009 -
Mibi07g0159 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1183 1253 IPR013083 -
Mibi07g0159 1253 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mibi07g0159 1253 FunFam Major actin 260 340 - -
Mibi07g0159 1253 Pfam U-box domain 1183 1252 IPR003613 GO:0004842|GO:0016567
Mibi07g0159 1253 Pfam Protein tyrosine and serine/threonine kinase 914 1165 IPR001245 GO:0004672|GO:0006468
Mibi07g0159 1253 Gene3D HUPs 475 625 IPR014729 -
Mibi07g0159 1253 Gene3D Actin; Chain A, domain 4 182 273 - -
Mibi07g0159 1253 FunFam Actin, muscle 182 273 - -
Mibi07g0159 1253 ProSiteProfiles Protein kinase domain profile. 909 1175 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0159 Mibi-ChrMibi07 2211931 2222790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0159 1 356 Cytoskeleton Gene Families AT3G12110 97.472 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Mibi07g0159 Actin 2e-132 CL0108