Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0137 ATGAACATTATTTGTTTCTGTGATGACATTTTGCTAGGGGAAAAAGGGGAATGTACCTCTTCTTCTTCATCTTCTTCTCCAGTCAACTCTGGATCTTTTCCTCAATCTCCGATCATGAACTCCGATTTACCTTCCCCTCCTTCCTCCTACTGGTGCTACAGCTGCACCAGATTCGTCCGTCTCGTAGATCGCGAAGATGTCGCTTGCCCTCACTGTCAAGGCGGCTTCGTTGAAGAGATCCACAACCAAAACCAAAACCAAAACCAAAACCACAACCACCATCATCTAAGCCCTTTTCCTCCTTCTATCTTCCCCGATTCAGCTCCTACCTCCTACGATTTCAGCCGTCAAGGCTTCCGTCGAAGACGCCGTAACGCCGGTAGCAGATCTCCGTTTAACCCCGTTATCGTCCTACGTGGACCCGTCGACGGAGGCGTCACTCAAAACGGCGTCGTTCCCGAGAACGACGAGAGCAGCTTCGAGCTCTATTACGATGACGGTGACGGTAACGGCCTCCGCCCTTTACCGCCAACTATGTCTGAGTTCTTGTTAGGGTCAGGATTCGAACGGCTTCTAGAACAATTCGCTCAGATCGAGATGAACGGGTTCGGGCGACCCGAGAACCCGCCCGCTTCCAAATCAGCCATAGAGTCCATGCCTACGGTGGTTATTGAAGAGACTCATGTAAGTTCTGATTCTCACTGTGCTGTGTGTAAGGAGGCGTTTGAGATCAACACGGAGGCGCGTGAGATGCCTTGTAAGCATATTTATCACTCAGATTGTATACTTCCGTGGCTTTCGATGAGGAATTCATGCCCTGTTTGCCGACACGAGCTTCCGTCAGATCGGAACACTGTGGAGAGAATGTCTGGGCAGATTGATGATGAGACGGTTGGATTGACGATTTGGAGGCTTCCAGGTGGTGGATTTGCGGTTGGGAGATTTTCCGGTGGTCGGAGGGCCGGCGAGAGTCATTTTCCGGTGGTTTACACAGAAATGGACGGTGGGATTAACACGAATGGGGTTACGAGAACTGTTTCAAGAGCTGTGAGGAGTACAAGGGTTAGGGAAAGTCGTGGATTTGGCCGAATTGTGAGGAATTTCTTGTCTTTCTTTGGGAGGCGTGGCCGGTCAAGGTCAAGCTCAAGCTCATCTTCATCAAGTGAGTCTATCAGTGCAAGTCGTAGCCATTCGATTTCGTTGTTTGGTAGGAATTCAAGTAGGCGCAGCAGGACTTGGGTTATGGAAGATTGA 1254 0.5016 MNIICFCDDILLGEKGECTSSSSSSSPVNSGSFPQSPIMNSDLPSPPSSYWCYSCTRFVRLVDREDVACPHCQGGFVEEIHNQNQNQNQNHNHHHLSPFPPSIFPDSAPTSYDFSRQGFRRRRRNAGSRSPFNPVIVLRGPVDGGVTQNGVVPENDESSFELYYDDGDGNGLRPLPPTMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKSAIESMPTVVIEETHVSSDSHCAVCKEAFEINTEAREMPCKHIYHSDCILPWLSMRNSCPVCRHELPSDRNTVERMSGQIDDETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGGINTNGVTRTVSRAVRSTRVRESRGFGRIVRNFLSFFGRRGRSRSSSSSSSSSESISASRSHSISLFGRNSSRRSRTWVMED 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0137 417 Pfam Ring finger domain 234 276 IPR001841 -
Mibi07g0137 417 Pfam zinc-ribbon 49 80 IPR039525 GO:0061630
Mibi07g0137 417 Pfam Protein of unknown function (DUF1117) 298 405 IPR010543 -
Mibi07g0137 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 282 IPR013083 -
Mibi07g0137 417 SMART ring_2 235 275 IPR001841 -
Mibi07g0137 417 CDD RING-H2_RNF126_like 235 276 - -
Mibi07g0137 417 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Mibi07g0137 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 87 280 - -
Mibi07g0137 417 SUPERFAMILY RING/U-box 215 284 - -
Mibi07g0137 417 MobiDBLite consensus disorder prediction 375 396 - -
Mibi07g0137 417 FunFam E3 ubiquitin-protein ligase RING1-like 197 282 - -
Mibi07g0137 417 MobiDBLite consensus disorder prediction 18 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0137 Mibi-ChrMibi07 2012140 2014216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0137 174 287 C3H Transcription Factor Family AT5G01980 44.737 2.82e-28 114