Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi07g0053 ATGGACCCCGTTGAGGTGAAGCGCGTTTTCCAGATGTTCGATCGCAACGGCGACGGCGTGATCACGCGCAAGGAGCTGAACGACTCCCTCGGTAGCCTCGGCATCGTCATCTCTGACTCCGATTTACGCCAGATGATCCACAACATCGACGCCAACGGCGACGGATGCATCGACATGGAGGAGTTCGGCGAGCTCTACCACACCATCATGGCCGAACGCAACGAAGAGGACGACATGAGAGAGGCTTTCGACGTTTTCGACCAAAACGGCGACGGTTTCATCTCCGTCGAAGAATTGAGATCCGTGTTGTCCTCGCTAGGGTTGAAACAGGGGAAGGCCATGGAGGATTGCAAGAAGATGATCATGAAGGTCGATGTAGATGGAGACGGGAGGGTCAATTTCACCGAGTTTATGCAGATGATGAAGGCTGGTGGATTCGGCGCTCTCGGCTAA 453 0.5475 MDPVEVKRVFQMFDRNGDGVITRKELNDSLGSLGIVISDSDLRQMIHNIDANGDGCIDMEEFGELYHTIMAERNEEDDMREAFDVFDQNGDGFISVEELRSVLSSLGLKQGKAMEDCKKMIMKVDVDGDGRVNFTEFMQMMKAGGFGALG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi07g0053 150 FunFam Calmodulin 1 2 144 - -
Mibi07g0053 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Mibi07g0053 150 SUPERFAMILY EF-hand 5 141 IPR011992 -
Mibi07g0053 150 PRINTS Parvalbumin signature 65 83 - -
Mibi07g0053 150 PRINTS Parvalbumin signature 87 103 - -
Mibi07g0053 150 PRINTS Parvalbumin signature 124 137 - -
Mibi07g0053 150 Pfam EF-hand domain pair 77 142 IPR002048 GO:0005509
Mibi07g0053 150 Pfam EF-hand domain pair 6 66 IPR002048 GO:0005509
Mibi07g0053 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Mibi07g0053 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Mibi07g0053 150 Gene3D - 2 43 - -
Mibi07g0053 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Mibi07g0053 150 SMART efh_1 78 106 IPR002048 GO:0005509
Mibi07g0053 150 SMART efh_1 116 144 IPR002048 GO:0005509
Mibi07g0053 150 SMART efh_1 41 69 IPR002048 GO:0005509
Mibi07g0053 150 SMART efh_1 5 33 IPR002048 GO:0005509
Mibi07g0053 150 Gene3D - 106 144 - -
Mibi07g0053 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Mibi07g0053 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Mibi07g0053 150 Gene3D - 44 105 - -
Mibi07g0053 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Mibi07g0053 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Mibi07g0053 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi07g0053 Mibi-ChrMibi07 1055566 1056018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi07g0053 1 149 EF-hand Containing Proteins AT1G05990 71.333 2.61e-72 212