Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2902 ATGAGGGTTGTTATCGCCACAAGAACAAACCAATTTTTCATTGAAGTAAGTAGCCAAGAAAAAGTTGTTGAAATCAAAAGGAAAATAGAACAAATCCTCGGTGTCTCAGTGGCTTCACAAATACTTACAGTATCTGGGTGGGAGCTTATAGATGGGCTAGACATGGAAGATTACCCCATAGTCACAGATAGTACAAAAGTTGACCTCACAATTAAACCAGTCTCTCCACATTCTTCCCATTTTAATAAAATTCAAATCATAGTGAAATTTTCAGCAAGACAGATCATCATAGAGGTGGACAGAACAGACACCGTTCGAAGTTTGAAGGAAAAGATTCACATTCTTGATAACATGCCAATAAAAAGGATGTCACTTTTCTTTTCAGGTGTGGAATTGGATGAAGATTTCAGAAATTTGAGTGAGTATGGCATAGGTGAATTTTCTGAGATTGTGGTTTTCCTTAAGAATATGGGTAGGTCAAGAGAGGATCCTCCCTCAAGGAAGTTAAGTTTGGTGGTACAAACCTCCTCTAGTTTACTGAACGCAGCCACAATTCCAGTGGGAATGAGAGATGCAAGTACTGTGAGTGAGTTGAAGCAAATGTTGTTGAGCAGAAAGATTCTGCCACCTGATGAGTATTTGTTCATACACAAGCAAAGGATAATGCGTGATAGTTGTAGCCTCAGGTGGCATGGAGTTGAGAATGGGGACTTTCTCTATGTCTTCAAGGGAACTGTTAGTCGCAGTGGCAGTTTCTAA 759 0.3966 MRVVIATRTNQFFIEVSSQEKVVEIKRKIEQILGVSVASQILTVSGWELIDGLDMEDYPIVTDSTKVDLTIKPVSPHSSHFNKIQIIVKFSARQIIIEVDRTDTVRSLKEKIHILDNMPIKRMSLFFSGVELDEDFRNLSEYGIGEFSEIVVFLKNMGRSREDPPSRKLSLVVQTSSSLLNAATIPVGMRDASTVSELKQMLLSRKILPPDEYLFIHKQRIMRDSCSLRWHGVENGDFLYVFKGTVSRSGSF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2902 252 ProSiteProfiles Ubiquitin domain profile. 84 159 IPR000626 GO:0005515
Mibi06g2902 252 SUPERFAMILY Ubiquitin-like 82 164 IPR029071 -
Mibi06g2902 252 Gene3D - 156 248 - -
Mibi06g2902 252 SUPERFAMILY Ubiquitin-like 183 245 IPR029071 -
Mibi06g2902 252 PANTHER UV EXCISION REPAIR PROTEIN RAD23 92 155 - -
Mibi06g2902 252 SMART ubq_7 169 244 IPR000626 GO:0005515
Mibi06g2902 252 SMART ubq_7 84 155 IPR000626 GO:0005515
Mibi06g2902 252 SMART ubq_7 1 72 IPR000626 GO:0005515
Mibi06g2902 252 Pfam Ubiquitin family 8 69 IPR000626 GO:0005515
Mibi06g2902 252 Pfam Ubiquitin family 86 155 IPR000626 GO:0005515
Mibi06g2902 252 Pfam Ubiquitin family 180 241 IPR000626 GO:0005515
Mibi06g2902 252 Gene3D - 1 72 - -
Mibi06g2902 252 Gene3D - 83 155 - -
Mibi06g2902 252 ProSiteProfiles Ubiquitin domain profile. 1 65 IPR000626 GO:0005515
Mibi06g2902 252 ProSiteProfiles Ubiquitin domain profile. 169 241 IPR000626 GO:0005515
Mibi06g2902 252 CDD Ubl_ubiquitin_like 184 242 - -
Mibi06g2902 252 CDD Ubl_ubiquitin_like 86 153 - -
Mibi06g2902 252 CDD Ubl_ubiquitin_like 12 65 - -
Mibi06g2902 252 SUPERFAMILY Ubiquitin-like 1 73 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2902 Mibi-ChrMibi06 48556062 48556820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2902 84 158 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.211 4.00e-06 43.5