LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g2894	ATGAAAAGAAATTCAGTATACATCGTGCTGGAGGAAATTCTATTGAATCGGCTGATTAAATCATTTTTAATTGATAAATTGGGGGCGCCTCCCAGCCCCCAGCCCCAGCCAAGAGCCAAGAGGGAAGTCGAACCAAACCATCATCGTCGTCGTCATAGACATAGAATGTGTGAGCAAGTGAAAGGTGAGTACGAGGTGTGCGAAGAGATCGGTCGTGGTCGGTTCGGGAGGGTGTTCCGGTGCTTCCAGGCGGCCTCGAACCAGTGGTTGGCGTGCAAAGTGATAGAGAAGCGGCTGCTGACGGATTCGATCGATCGGCAGTGCCTGGAGAATGAAGGGAAGTACATGGCTCTCCTCTCCCCTCACCCCAATATCCTGCAGATATTTGACGTGTTGGAGGACGACGATTCGCTCTCCCTCGTTGTCGACCTCTGTGAGCCCCTCACTCTGCTCGACCGCATCATGCATCGCCCCTTCCTGGAGAGCCAGGCCTCCTCCGTCATGAAGCAGCTCCTCCAAGCCCTCTCCCACTGCCATCGCCTCGGCGTTGCCCACAGGGACATCAAACCCGACAACATCTTGTTCGATTCCCACTCCATTCTCAAGCTCGCCGACTTTGGCTCCGCAGAGTGGTTCGCCGACGGGCCCACCATGACCGGCGTCGTTGGCACCCCCCATTATGTCGCCCCGGAGGTCCTCTTGGGCAGACACTACGACCACAAAGTTGATGTGTGGAGTAGCGGTGTTGTTTTGTACATCATGTTGTCTGGGATCCCCCCCTTTTATGGAGATTCCCCCCAACAGATCTTTGACTCTGTCTTGAGGGCTAATCTCAGGTTCCCCTCTAGCCTTTTCAGGTCCCTCTCTTCCCCCGCTAAGGATCTCATGAGGAAGATGATGTGTAGGGATCCATCCAGGCGCTTATCTGCAGACCAAGCCCTCAGTATGGCACCCTTGGATCGTGAGTGGAGGAGAGACCACCGATCTCACTTGAAGATTTGGGAACATGATCCGGCCAATTATGAAATTGTGCCTCTGTATAGTTCTTGTTCTCCGTCGTTTCCGTCCGGCCACGGAAATTCTAATAAGATCCACAGCGCAGTCTTCCGCTACAATCGATCTCAGTGA	1128	0.5381	MKRNSVYIVLEEILLNRLIKSFLIDKLGAPPSPQPQPRAKREVEPNHHRRRHRHRMCEQVKGEYEVCEEIGRGRFGRVFRCFQAASNQWLACKVIEKRLLTDSIDRQCLENEGKYMALLSPHPNILQIFDVLEDDDSLSLVVDLCEPLTLLDRIMHRPFLESQASSVMKQLLQALSHCHRLGVAHRDIKPDNILFDSHSILKLADFGSAEWFADGPTMTGVVGTPHYVAPEVLLGRHYDHKVDVWSSGVVLYIMLSGIPPFYGDSPQQIFDSVLRANLRFPSSLFRSLSSPAKDLMRKMMCRDPSRRLSADQALSMAPLDREWRRDHRSHLKIWEHDPANYEIVPLYSSCSPSFPSGHGNSNKIHSAVFRYNRSQ	375

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g2894	375	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	183	195	IPR008271	GO:0004672\|GO:0006468
	Mibi06g2894	375	ProSiteProfiles	Protein kinase domain profile.	64	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2894	375	SMART	serkin_6	64	319	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2894	375	Gene3D	Phosphorylase Kinase; domain 1	37	145	-	-
	Mibi06g2894	375	FunFam	Maternal embryonic leucine zipper kinase	56	336	-	-
	Mibi06g2894	375	MobiDBLite	consensus disorder prediction	29	52	-	-
	Mibi06g2894	375	PANTHER	SERINE/THREONINE-PROTEIN KINASE	51	329	-	-
	Mibi06g2894	375	CDD	STKc_CAMK	64	315	-	-
	Mibi06g2894	375	Pfam	Protein kinase domain	64	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi06g2894	375	Gene3D	Transferase(Phosphotransferase) domain 1	149	340	-	-
	Mibi06g2894	375	SUPERFAMILY	Protein kinase-like (PK-like)	43	339	IPR011009	-
	Mibi06g2894	375	ProSitePatterns	Protein kinases ATP-binding region signature.	70	93	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g2894	Mibi-ChrMibi06	48454992	48458195	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g2894	29	314	EF-hand Containing Proteins	AT2G38910	39.088	2.05e-70	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Mibi06g2894		Pkinase	9.3e-68	CL0016