Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2861 ATGCCTCTGGATCTTATTCACCCATCAATTCCTCTAATTGGCAGCTCCTCCTTCTATGGCGTCCCGCCTATTCCGGTTGTACGGTGGAACGGTTTTCTACCGACTATGGAGAAAAATGTTGAAGATTTACGTGTGCGCATATTCAACTATCTAGCAAATATTGCATATGTGGAGGAAAATTTTATTATTGATCACATGGAGCAGTATGAAGTACTGGAGCAAATTGGAAAAGGTGCTTTTGGCTCCGCTCTTCTTGTGCGGCATAAGCATGAGAAAAAAAAATATGTGCTGAAGAAAATTCGCCTTGCCCGCCAAACTGAGCGGTCTCGTAGATCTGCACATCAGGAGATGGAGCTAATCTCTAAATTGAGATATCCATTTATTGTTGAGTATAAAGATTCCTGGGTAGAAAAGGGGTGCTATGTGTGCATTATTATAGGTTATTGTGAGGGCGGAGATATGGCAGAAGCTATAAAGAAGGCTAATGGTGTTTTCTTTCCTGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCCCTCGACTACTTACACCTGAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTTTTGACAAAAGATCAAGACATACGCCTTGGTGATTTTGGGCTTGCCAAAATATTGACTTCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCAAGTTACATGTGCCCTGAGCTCTTGGCTGATATTCCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGGCAGCTCATAAGCCTGCATTCAAAGCATTTGATATACAGGCACTAATCAACAAGATTAACAAGTCTATAGTGGCTCCACTGCCAACAACGTATTCTGGTGCATTTCGGAGTCTTGTTAAAAGCATGCTGCGGAAAAATCCTGAGCTTAGACCTAGTGCCGCGGAGCTGCTTGGACATCGGCATCTTCAACCTTATATTCACAAGATCCATGTAAAGCTTAATAACCCCAGGCGAAGCACATTACCAGTTCATTGGTCAGAATCCAACTACATGAAGAAAACTAGATTTCTGGAGTCGGAAGATGATCCTGTTTCAGTATACAGAGATAAGGGATATTCTTTTAGCAATGATCTGACTCTTAATCCTAGCATATCTGGAGCTGATCAAGATTCTGTTTGCTCTACCCTAGAAATAGATTGTACTCCAGATCATTTGAATCAACGATTGGCAGAGCTATGTACTGGAGATAGCCTTGAGGTGAAGTCAGTCTGTAAGCCTGTTGTTTCTAGAACATCTAGTCTCACCAAGACTGCAAGACACACCTCCATAAAGGCTTCTGCCACCACTAAGACATCAATGGAGCCCACAAAAAAGCGTGTGTCGCTTCCTACTCCACGCAAAGCCAGACAACCAGTCTATACAACTCGCAGAGCATCGTTCCCATTGCATACAAGAAGTTCGGATCAAGACTCCCGTCATGGGCCTGATGTTGGTATGCTTAGCCATATAAAATCGCCAGAAATTTCAGTAAACTCTCCTAGAATTGATAAGATAGCTGAATTCCCACTGGCGTCATATGAGGATCCACTTTTATCCATCTATAGAACTCCAACCTCAGCCAAGGGTTCCTCAGGCTCCACACCTTGTGGTGATCGTTCAATCATGAAGGATAAATGCACGGTTCAGATATGTGATAAAGCCTCTGCCAAGCATCGATTGACAGATTCATGGCAGGGAATCGAGCTAAACACTTTTCGGGAAAATGCTGAGGATAAAAGTGGCTCCTCTGATCAAAATGCAACCGCTGGAGCATCAAGCCATGCCTCTTCAGACATGCGCCGGCGGCAGTTTGACACTTCATCATTCCGACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAACATGAAAGATATGAAGAACTGGGGGTTTTATTGAAACCATTTGGGCCAGGGAAGGTTTCTCCAAGGGAAACTGCCATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTCTCAACCGTGAAGAATCCCAATAA 2058 0.43 MPLDLIHPSIPLIGSSSFYGVPPIPVVRWNGFLPTMEKNVEDLRVRIFNYLANIAYVEENFIIDHMEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHQEMELISKLRYPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVFFPEEKLCKWLVQLLMALDYLHLNHILHRDVKCSNIFLTKDQDIRLGDFGLAKILTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDIQALINKINKSIVAPLPTTYSGAFRSLVKSMLRKNPELRPSAAELLGHRHLQPYIHKIHVKLNNPRRSTLPVHWSESNYMKKTRFLESEDDPVSVYRDKGYSFSNDLTLNPSISGADQDSVCSTLEIDCTPDHLNQRLAELCTGDSLEVKSVCKPVVSRTSSLTKTARHTSIKASATTKTSMEPTKKRVSLPTPRKARQPVYTTRRASFPLHTRSSDQDSRHGPDVGMLSHIKSPEISVNSPRIDKIAEFPLASYEDPLLSIYRTPTSAKGSSGSTPCGDRSIMKDKCTVQICDKASAKHRLTDSWQGIELNTFRENAEDKSGSSDQNATAGASSHASSDMRRRQFDTSSFRQRAEALEGLLEFSARLLQHERYEELGVLLKPFGPGKVSPRETAIWLSKSFKENTLNREESQ 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2861 685 FunFam Serine/threonine-protein kinase Nek2 66 148 - -
Mibi06g2861 685 ProSiteProfiles Protein kinase domain profile. 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi06g2861 685 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Mibi06g2861 685 CDD STKc_Nek 68 318 - -
Mibi06g2861 685 Gene3D Phosphorylase Kinase; domain 1 50 148 - -
Mibi06g2861 685 SUPERFAMILY Protein kinase-like (PK-like) 66 368 IPR011009 -
Mibi06g2861 685 MobiDBLite consensus disorder prediction 436 506 - -
Mibi06g2861 685 SMART serkin_6 69 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi06g2861 685 FunFam Serine/threonine-protein kinase Nek3 151 397 - -
Mibi06g2861 685 MobiDBLite consensus disorder prediction 589 620 - -
Mibi06g2861 685 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 66 635 - -
Mibi06g2861 685 MobiDBLite consensus disorder prediction 436 459 - -
Mibi06g2861 685 MobiDBLite consensus disorder prediction 595 611 - -
Mibi06g2861 685 Gene3D Transferase(Phosphotransferase) domain 1 149 341 - -
Mibi06g2861 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Mibi06g2861 685 Coils Coil 672 685 - -
Mibi06g2861 685 Pfam Protein kinase domain 69 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2861 Mibi-ChrMibi06 48182743 48188639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2861 75 324 MAP Kinase Kinase Kinase AT1G53570 32.157 8.28e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Mibi06g2861 Pkinase 1.2e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2861 06 48182743 48188639 Mibi06g2861 06 48182743 48188639 CCT
Mibi06g2861 06 48182743 48188639 Mibi06g2861 06 48182743 48188639 ECH