Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2860 ATGACATATGCAATAACCAACGCACGTGAGTATTATAAGAACAGTAATGATGTTGAAGGAACACTGAAACAGTTACCTCGATATATGGTTGCTGAAAGGGCTGTGCTGCAAAGTTTGAAGAAGGCTCCTGGAAATTACTTGCAGGCTTTGAAAGCCATACCACGGACATTGAGAATGATGTATGTTCATAGTTACCAAAGCTATTTGTGGAACCACGCTGCAAGTGCGAGGGTGCAAAAATATGGTAGTGAACAAGTTGTATTAGGAGACTTGGTGTATCGCAAAGATAATGCTGCAGGAAATGACACAGGGTTTGTCGGTCTGGACTGCTCTGATAGCTTTAATAACAAGTCCTCTACTGAAGATGAAGAAATGGATGTTCTTGAAGAAAGCAATAGTCACGTCAAGGTTTTGACTGCTGATGATATTAAGGCGGGATGTTATACTATTGATGATGTCATCCTTCCGATGCCTGGTTCACGGGTAATTTATCCAACAAATGAGGTTTTTTCCGAAGTTTATCATGATTTGGCAAAGAAGGATGCAATCAGTTTAATAGACTCTGTACACAATGTCAAGGAATTTTCGATAACTAGCATGACTGGAAGTTACAGGAGGGTTTTTCAGAAGCCTATAAATTTTGAATGGGAATTACTTACATATACTGATAATAGCAAACCATTGGCAGAGACAGACTTGGACAAAATGAGGAAGACCCTGCCCATAGACAATTTCAAACCAGTGAATGCCCCCAGTGGGGAGAAGGAAGAAAACCTTGATTGCAATAGACAATCAGAAAGTTCAGATGACAGTGCGAAGCTTGAGATTTCTAATGATGAGACGCCTGGTGATGAAGTAGAGTTATTACAAGATGAATCCATATGCACCTCTAATTCTCAGGATTCCCAAAGTGCTCTCAAATTAAGTTTTACTCTTCCTTCTTCTTGTTATGCGACTATGGCCATAAGAGAGCTGCTGAAGACTTCAACATCTGTTGCATATCACAAGACATTAAACCAAGATCGAGGGGAAGGGGATAAAGAAGAGAGAGAGATAGAAATAGAGCTAGGGAACATGTTGGATAGAGTAGGAGAGCAGTTCCACCAATTCATAGCCCCAAGAAGCTCACTCCCTCTTCCTCCATCCCTCCCTCCTCTTTTCGATGCTTACATTAGTCCTTCTCATCAACACTTGCCCCTCCACCAGCAGCAGCCGCCAGCAAATCTGTTGTCGCCATTGCACCACCACAAAGATGGAGAGGAGGAGGAGGAGGAGGAACAAAGAGGGCGCATGATGAGCTTCGAGATGAGTGAGAGAGAAGGAGGATTAGGGGAGCATGAGCTCAAGGATTCCACCGCCTGGACCGACGACGAGGTCCTCGCTCTTCTCAGGATCAGATCTGACCTCGACACTTGGTTCCCTCACCTCACCTGGGAACATGTTTCCAGGAAGCTTGCAGAGCTTGGATTTAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTCGAAGAGGAAACCAGTTACTTCAACAACATCCATTACACCAAGAACCGCTTTATGAGTGAGCTCGAACAGCTTTACCAACAACAGCAACAGCAAGAAGAAGAAGAAGAAGAAGCACATCAAATGCCAGGAGGGGTAGTAGGTGAGGTTGAGGTTGAGGTTGAGGCTGGGGTTGATGCTGGGTGTGAAGAGAGTAATAAGCAGGCGGCTGACCAACAACACGTAGTGAAGATGGATCACGGTGCCTTACAACATGGCGATGACGCTTCACTGACCAAGAAATGTGAGGAAACAACACTAGTGAAGAGGAGGAGGAGGAGGAGGGGGAAGCGAAAGAGGGAGGAGGATGATAAGTTGGAGATTCTGAAGGGATTTTGTGAGAAGATGGTGAACAGAATGATGGAGAAGCAAGAGGAGATGCACAAGAAGCTGCTGGAGGACATGGTGAGGAGAGATGAGGAGATAATGGAGAGGCAGGAGGCGTGGAAGAAAGAGGAGATGGAGGGCATGAACTGGGAGCTGGAATTGATGGCCAAGGAGCAGGCCGTTGCGGCCCAAAGGCAGGCCGCCATCATCGAGTTGCTGAAGAAAATTTCAGAGCAGAAGAATTGTGGCAGCAGAAGCGTATCATCAGACGATCCAGATCCAAATTGTGCCCCCTCGAACTCATCATGGCGAAACCCTAACCAGTCCAACAACAGTAAGTATACGACGGCAGATGATGATGATGATGATGATAAACAAGCTGATGGTGGTGGTGGTTCGAGCGAAGTATTAGTTGGGAATATTAATCCATCATGTTCATCAGATCATCATGATTGCGGTGTGAAGGAGGAGGTGGGGAGGAGGTGGCCGAGGGAGGAAGTGATGGCACTGATAAAGCTGAGGAGCAGTAGCAGTAGTGCGAATGAAGAGAGAGAAGGCGGAGGAGGGAGGATTCCGCTGTGGGAGAGGATATCGGAAGGGATGAGGGGTATGGGATACAGTAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAATACTTCAGGAAGACCAAGCATCTCTCCAAGAACAGGTCCCTTGATTCCAGAACCTGCCCCTACTTCCCTCAACTCACCTCTTTGTATTCTCAGTAG 2628 0.4631 MTYAITNAREYYKNSNDVEGTLKQLPRYMVAERAVLQSLKKAPGNYLQALKAIPRTLRMMYVHSYQSYLWNHAASARVQKYGSEQVVLGDLVYRKDNAAGNDTGFVGLDCSDSFNNKSSTEDEEMDVLEESNSHVKVLTADDIKAGCYTIDDVILPMPGSRVIYPTNEVFSEVYHDLAKKDAISLIDSVHNVKEFSITSMTGSYRRVFQKPINFEWELLTYTDNSKPLAETDLDKMRKTLPIDNFKPVNAPSGEKEENLDCNRQSESSDDSAKLEISNDETPGDEVELLQDESICTSNSQDSQSALKLSFTLPSSCYATMAIRELLKTSTSVAYHKTLNQDRGEGDKEEREIEIELGNMLDRVGEQFHQFIAPRSSLPLPPSLPPLFDAYISPSHQHLPLHQQQPPANLLSPLHHHKDGEEEEEEEQRGRMMSFEMSEREGGLGEHELKDSTAWTDDEVLALLRIRSDLDTWFPHLTWEHVSRKLAELGFKRSAEKCKEKFEEETSYFNNIHYTKNRFMSELEQLYQQQQQQEEEEEEAHQMPGGVVGEVEVEVEAGVDAGCEESNKQAADQQHVVKMDHGALQHGDDASLTKKCEETTLVKRRRRRRGKRKREEDDKLEILKGFCEKMVNRMMEKQEEMHKKLLEDMVRRDEEIMERQEAWKKEEMEGMNWELELMAKEQAVAAQRQAAIIELLKKISEQKNCGSRSVSSDDPDPNCAPSNSSWRNPNQSNNSKYTTADDDDDDDKQADGGGGSSEVLVGNINPSCSSDHHDCGVKEEVGRRWPREEVMALIKLRSSSSSANEEREGGGGRIPLWERISEGMRGMGYSRSAKRCKEKWENINKYFRKTKHLSKNRSLDSRTCPYFPQLTSLYSQ 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2860 875 FunFam Trihelix transcription factor GT-2 454 510 - -
Mibi06g2860 875 ProSiteProfiles Myb-like domain profile. 783 843 IPR001005 -
Mibi06g2860 875 SUPERFAMILY Pseudouridine synthase 50 328 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi06g2860 875 Coils Coil 515 542 - -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 702 736 - -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 397 432 - -
Mibi06g2860 875 Gene3D TruD, catalytic domain 13 330 IPR042214 -
Mibi06g2860 875 CDD GT1 782 850 - -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 256 280 - -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 702 775 - -
Mibi06g2860 875 ProSiteProfiles TRUD domain profile. 1 210 IPR011760 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi06g2860 875 Gene3D - 784 848 - -
Mibi06g2860 875 Gene3D - 454 510 - -
Mibi06g2860 875 PANTHER FI21293P1 405 874 - -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 244 283 - -
Mibi06g2860 875 SMART sant 450 507 IPR001005 -
Mibi06g2860 875 SMART sant 780 845 IPR001005 -
Mibi06g2860 875 Pfam tRNA pseudouridine synthase D (TruD) 5 212 IPR001656 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mibi06g2860 875 ProSiteProfiles Myb-like domain profile. 446 505 IPR001005 -
Mibi06g2860 875 Pfam Myb/SANT-like DNA-binding domain 782 871 IPR044822 -
Mibi06g2860 875 Pfam Myb/SANT-like DNA-binding domain 453 514 IPR044822 -
Mibi06g2860 875 MobiDBLite consensus disorder prediction 413 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2860 Mibi-ChrMibi06 48156207 48165296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2860 454 875 Trihelix Transcription Factor Family AT5G28300 39.186 7.57e-72 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Mibi06g2860 TruD 1.5e-24 CL0649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2860 06 48156207 48165296 Mibi06g2860 06 48156207 48165296 ECH