LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi06g2775	ATGTTTGCTTCAGTTGCGGATACAGGACATGCAAGTAGTGGAGCGTCAGGATCCACTTTGATTCCAAAGCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTCACTGGCACATTCACAAGGTGGTCTGAGCATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCATTTCAAGTTATTTGCAGCTTGATGCCGGGATATCACCAGTACAAATTTAATGTGGATGGTGAGTGGCAGCATGATGAGCAACAGCCATTTGTAAGTGGGGGCTTTGGAGTAGTAAATACTATTTTCTTGACAAGAGAACCAGATGCTTTGCCCTCCATATTTATTCCTGAGATACCTGGAAGATCCCACATGGAAGTTGATAATGATACCTTTGGGCCTGTGGAAGCTAATTTAAGGATGTCAGAGTCTGATCTAGACGTCTCTCGCCACCGTATAGCTGTATTCTTGTCTACATATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCGTCGCCCTTGATATCAACTTACCAGTTAAGCAAGCATTCCATATTCTTTATGAACAGGGCATATCTATGGCTCCTTTATGGGATTTTCACAAGAGTCAGTTTGTTGGAGTGCTTAGCGCTATGGACTTCATTCTAATGTTGAAAGAGCTTGGTAATCATGGGTCAAATTTGACTGAAGAGCAACTTGAGACTCATACTATATTAGCATGGAAAGAGGTGAAGTTACAACAATGCATAACAAAGGATAATGGGAGATCATATCCTCAGCGCTTTGTTCATGCTGGGCCTCATGAGTGTCTGAAAGATGTGGCTTTGAAAATTTTGCAAAATAATGTGGCGTCAGTTCCTATTATTCATTCTGCTTCTCAGGATGGTTCATTTCCTCAGCTTCTACATCTTGCTTCCTTATCAGAAATACTAAAAAGTATTTGTAGGCACTTTAAGCATTCCTCTACTTCCTTGCCCATTCTTCAACTACCAATTGGTATGATACCTTTGGGTACATGGGTGCCAAAAGTTGGGGAATCAAATAGACAGCCACTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAATACCAGTTGTGGATGATAAGGACTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCACTGGCTAAAGATAAAGCTTATGCACGGATGTCCCTTGATGAAATTAGCATCCATCAGGCGTTGCTTTTGGGACAAGATGCAAATTCACCTTATGGCTTTTACAATGGTCAGAGATGCCATATGTGTTTGAGATCTGATTTGTTGCATAAAGTGATCGAGCGGTTATCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGCGTGTGGAGGGGATTATTTCTTTGAGGGACGTGTTCAGATTCTTGTTAGCATAG	1449	0.4244	MFASVADTGHASSGASGSTLIPKRFVWPYGGRRVFLTGTFTRWSEHIPMSPMEGCPTAFQVICSLMPGYHQYKFNVDGEWQHDEQQPFVSGGFGVVNTIFLTREPDALPSIFIPEIPGRSHMEVDNDTFGPVEANLRMSESDLDVSRHRIAVFLSTYTAYELLPESGKVVALDINLPVKQAFHILYEQGISMAPLWDFHKSQFVGVLSAMDFILMLKELGNHGSNLTEEQLETHTILAWKEVKLQQCITKDNGRSYPQRFVHAGPHECLKDVALKILQNNVASVPIIHSASQDGSFPQLLHLASLSEILKSICRHFKHSSTSLPILQLPIGMIPLGTWVPKVGESNRQPLAMLRPNASLGAALSLLIQAEVSSIPVVDDKDSLLDIYSRSDITALAKDKAYARMSLDEISIHQALLLGQDANSPYGFYNGQRCHMCLRSDLLHKVIERLSNPGVRRLVIVEPGSKRVEGIISLRDVFRFLLA	482

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi06g2775	482	Pfam	Glycogen recognition site of AMP-activated protein kinase	21	103	IPR032640	-
	Mibi06g2775	482	FunFam	Sucrose nonfermenting 4-like protein	18	103	-	-
	Mibi06g2775	482	SUPERFAMILY	E set domains	20	101	IPR014756	-
	Mibi06g2775	482	SMART	cbs_1	432	481	IPR000644	-
	Mibi06g2775	482	SMART	cbs_1	168	217	IPR000644	-
	Mibi06g2775	482	SMART	cbs_1	349	397	IPR000644	-
	Mibi06g2775	482	SUPERFAMILY	CBS-domain pair	148	318	IPR046342	-
	Mibi06g2775	482	ProSiteProfiles	CBS domain profile.	345	403	IPR000644	-
	Mibi06g2775	482	PANTHER	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	139	480	-	-
	Mibi06g2775	482	SUPERFAMILY	CBS-domain pair	342	481	IPR046342	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi06g2775	Mibi-ChrMibi06	47475201	47481036	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi06g2775	30	89	Protein tyrosine phosphatase (PTP) family	AT3G52180	36.066	2.57e-06	47.4

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mibi06g2775	06	47475201	47481036	Mibi06g2775	06	47475201	47481036	CCT
	Mibi06g2775	06	47475201	47481036	Mibi06g2775	06	47475201	47481036	ECH

Showing 1 to 2 of 2 entries