Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2775 ATGTTTGCTTCAGTTGCGGATACAGGACATGCAAGTAGTGGAGCGTCAGGATCCACTTTGATTCCAAAGCGGTTCGTCTGGCCTTACGGGGGAAGAAGGGTGTTTCTCACTGGCACATTCACAAGGTGGTCTGAGCATATACCTATGTCTCCTATGGAGGGATGTCCTACTGCATTTCAAGTTATTTGCAGCTTGATGCCGGGATATCACCAGTACAAATTTAATGTGGATGGTGAGTGGCAGCATGATGAGCAACAGCCATTTGTAAGTGGGGGCTTTGGAGTAGTAAATACTATTTTCTTGACAAGAGAACCAGATGCTTTGCCCTCCATATTTATTCCTGAGATACCTGGAAGATCCCACATGGAAGTTGATAATGATACCTTTGGGCCTGTGGAAGCTAATTTAAGGATGTCAGAGTCTGATCTAGACGTCTCTCGCCACCGTATAGCTGTATTCTTGTCTACATATACTGCTTATGAGTTGCTTCCTGAGTCAGGCAAGGTCGTCGCCCTTGATATCAACTTACCAGTTAAGCAAGCATTCCATATTCTTTATGAACAGGGCATATCTATGGCTCCTTTATGGGATTTTCACAAGAGTCAGTTTGTTGGAGTGCTTAGCGCTATGGACTTCATTCTAATGTTGAAAGAGCTTGGTAATCATGGGTCAAATTTGACTGAAGAGCAACTTGAGACTCATACTATATTAGCATGGAAAGAGGTGAAGTTACAACAATGCATAACAAAGGATAATGGGAGATCATATCCTCAGCGCTTTGTTCATGCTGGGCCTCATGAGTGTCTGAAAGATGTGGCTTTGAAAATTTTGCAAAATAATGTGGCGTCAGTTCCTATTATTCATTCTGCTTCTCAGGATGGTTCATTTCCTCAGCTTCTACATCTTGCTTCCTTATCAGAAATACTAAAAAGTATTTGTAGGCACTTTAAGCATTCCTCTACTTCCTTGCCCATTCTTCAACTACCAATTGGTATGATACCTTTGGGTACATGGGTGCCAAAAGTTGGGGAATCAAATAGACAGCCACTTGCAATGCTTAGGCCAAATGCATCTCTTGGTGCTGCCCTGTCTCTGTTAATTCAAGCTGAAGTTAGTTCAATACCAGTTGTGGATGATAAGGACTCGTTGCTTGACATATATTCAAGAAGTGATATTACTGCACTGGCTAAAGATAAAGCTTATGCACGGATGTCCCTTGATGAAATTAGCATCCATCAGGCGTTGCTTTTGGGACAAGATGCAAATTCACCTTATGGCTTTTACAATGGTCAGAGATGCCATATGTGTTTGAGATCTGATTTGTTGCATAAAGTGATCGAGCGGTTATCTAATCCTGGGGTTAGAAGACTTGTGATTGTGGAGCCAGGCAGCAAGCGTGTGGAGGGGATTATTTCTTTGAGGGACGTGTTCAGATTCTTGTTAGCATAG 1449 0.4244 MFASVADTGHASSGASGSTLIPKRFVWPYGGRRVFLTGTFTRWSEHIPMSPMEGCPTAFQVICSLMPGYHQYKFNVDGEWQHDEQQPFVSGGFGVVNTIFLTREPDALPSIFIPEIPGRSHMEVDNDTFGPVEANLRMSESDLDVSRHRIAVFLSTYTAYELLPESGKVVALDINLPVKQAFHILYEQGISMAPLWDFHKSQFVGVLSAMDFILMLKELGNHGSNLTEEQLETHTILAWKEVKLQQCITKDNGRSYPQRFVHAGPHECLKDVALKILQNNVASVPIIHSASQDGSFPQLLHLASLSEILKSICRHFKHSSTSLPILQLPIGMIPLGTWVPKVGESNRQPLAMLRPNASLGAALSLLIQAEVSSIPVVDDKDSLLDIYSRSDITALAKDKAYARMSLDEISIHQALLLGQDANSPYGFYNGQRCHMCLRSDLLHKVIERLSNPGVRRLVIVEPGSKRVEGIISLRDVFRFLLA 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2775 482 Pfam Glycogen recognition site of AMP-activated protein kinase 21 103 IPR032640 -
Mibi06g2775 482 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Mibi06g2775 482 SUPERFAMILY E set domains 20 101 IPR014756 -
Mibi06g2775 482 SMART cbs_1 432 481 IPR000644 -
Mibi06g2775 482 SMART cbs_1 168 217 IPR000644 -
Mibi06g2775 482 SMART cbs_1 349 397 IPR000644 -
Mibi06g2775 482 SUPERFAMILY CBS-domain pair 148 318 IPR046342 -
Mibi06g2775 482 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Mibi06g2775 482 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 139 480 - -
Mibi06g2775 482 SUPERFAMILY CBS-domain pair 342 481 IPR046342 -
Mibi06g2775 482 CDD E_set_AMPKbeta_like_N 24 100 - -
Mibi06g2775 482 Gene3D - 329 482 IPR046342 -
Mibi06g2775 482 ProSiteProfiles CBS domain profile. 162 224 IPR000644 -
Mibi06g2775 482 Gene3D - 139 322 IPR046342 -
Mibi06g2775 482 Gene3D Immunoglobulins 21 109 IPR013783 -
Mibi06g2775 482 Pfam CBS domain 348 393 IPR000644 -
Mibi06g2775 482 Pfam CBS domain 434 481 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2775 Mibi-ChrMibi06 47475201 47481036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2775 30 89 Protein tyrosine phosphatase (PTP) family AT3G52180 36.066 2.57e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2775 06 47475201 47481036 Mibi06g2775 06 47475201 47481036 CCT
Mibi06g2775 06 47475201 47481036 Mibi06g2775 06 47475201 47481036 ECH