Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2729 ATGAGGCATATGATTGGATATAAGGATGAGATCCAGTCCCGCCACCATGGTCCACGTCGCCGGATAGAGGTAAGTAAACGAAGCTCGTTCCGGGGGAATTGGTGGAATGATCCTGACACCAAGAGAACGCGAAGACTAGCCAAGTACAAGTTTTATGCAGCTGAAGATGAAAAGGTTTTTCCTTTGGCAAGTGTATTGGAAGAAGTTATTTATAGTGGCATTCTCATTTCTCCAACGTGTATTTCGTTTAAGAAAAGGGTCATATCCCGCGTCGCAGGCTTCAAAGAAGCAAAAAGCGCGGGAGAGATGGCTGTGGAATGTGGAAATGGAATGGGAAGCGGGAAGAAACACGATCTGGAGCTTGAAAAAGTTCGTTTACTGAGCTTGGCTCTCGATTTCGGCTTCGACCATGACTCCGCCACTAAATGTTTGGATCGCCTTATCGCCCTATACGGTGATGATGGCCGGGATTTCATCACTGTGGAGTACTGCGGTGATGATTTTCTAGCAGCTTTAGCCGATTCAATTCAAGATACCGAGGAATGGGATGATTTACAGGCAATAGAATCAGAAGCTTGTGGAACTTTGACTAACCTTCTTGATAAAAATGTTGTCGGGTGTAAGTATGAAAATAATGGCATTTCAGGATGTTGCATCAATATTATCGAGGATTCTCCGGAACCTCCGAAAAACCAGAAAGTGGTGGAGGTGGTTTCAAGTGACGAGGATATGGACTTTAGTGTTTCAAGGGAAAAATGCGCACCTCCAGGGTCTTATTGGAATGATAATATAGGCCAACAATCTCCAATATCAGGGGACTGCAGAAGTAGCATTACACAGAGCTCAATTTCTTCAACTGCCAGCAAAATAAGGTTGTCAGAGCCTAAGGATGAAAACCGTACTCTCACTTATGAAGAATTACAGGATCTAGATAACATTGAAATGGCCAACGTTGTTATATTTGGCAATAGGACATTTCGACCGTTGCAGCATCAAGCTTGTAAAGTAGCCTTGGCAAAGCAAGATTGTTTCATTCTTATGCCAACGGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCTACTCTTCAATCGGGTGTTACGGTAGTTGTATCTCCCTTACTTTCACTCATTCAGGACCAGATAATCACGTTGAACCTCAAGTTTGGAATACCAGCTACATTTTTGAACTCTCAGCAAACTACTTCACAAGCATCAGCTGTCCTTCAAGAGCTAAGAAAAGACAAACCTTCATGCAAGCTCTTGTATGTGACGCCTGAGAGAATTGCTGGCAATCAATCATTTCTTGAAGTTCTAAAATGCATGCATAACAAGTTAGCTGGATTCGTTGTTGATGAGGCGCACTGTGTCAGCCAATGGGGACATGATTTTCGACCTGATTATCGGGGACTGGGATGCCTTAAGGTGAACTTTCCGGATGTGCCTGTCATGGCATTGACTGCCACTGCAACACACTCTGTCCGCGAGGACATCTTAAGTGCTTTAAGAATCCCCCGTGCAATTGTTCTTGAAAGAAGCTTTGATAGGCCAAACTTGAAGTATGAAGTTATTGTTAAGACAAAGGATCCACTAATGCAGCTTGGGAAGCTAGTAATGGATCGCTTCAAGAATCAATGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCAGAATTTTTGAACCATAACTGTAACATTAAGACAGCGTATTACCATGCTGGCTTGGCTGCCCGCCAAAGGGTTGCTGTTCAAAAAAAATGGCACGACGGAGAGGTCCACATTGTTTGTGCAACTATTGCTTTTGGAATGGGGATAGACAAGCCTGATGTTCGCTTTGTCATCCACAATACATTGTCTAAATCAATTGAAAGCTATTATCAAGAATCAGGAAGGGCAGGAAGAGATAATCTACCTGCAGTTTGCATTGCTCTCTACCAGAAGAAGGATTTTAGTAGAGTGGTGTGCTTGATAAGGAATGGCCAAGGTTATAAAAAGGAAAGTCTTAAGGCGGCAGTCGCTCAAGCCCAAAAGATGCAACAATATTGTGAGCTAAAGGTAAGCAAGCTCCTTTACTTTTGGGTGAATGCCGGAGGCAAGCTTTGCTCAAACACTTTGGAGAGTCTCTTGACAGAAAAACTTGCAAATATGGATCTAACCCCTGTGATAACTGCCTCAAGAGTGGTCCGTGAGTAG 2205 0.4336 MRHMIGYKDEIQSRHHGPRRRIEVSKRSSFRGNWWNDPDTKRTRRLAKYKFYAAEDEKVFPLASVLEEVIYSGILISPTCISFKKRVISRVAGFKEAKSAGEMAVECGNGMGSGKKHDLELEKVRLLSLALDFGFDHDSATKCLDRLIALYGDDGRDFITVEYCGDDFLAALADSIQDTEEWDDLQAIESEACGTLTNLLDKNVVGCKYENNGISGCCINIIEDSPEPPKNQKVVEVVSSDEDMDFSVSREKCAPPGSYWNDNIGQQSPISGDCRSSITQSSISSTASKIRLSEPKDENRTLTYEELQDLDNIEMANVVIFGNRTFRPLQHQACKVALAKQDCFILMPTGGGKSLCYQLPATLQSGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTTSQASAVLQELRKDKPSCKLLYVTPERIAGNQSFLEVLKCMHNKLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKVNFPDVPVMALTATATHSVREDILSALRIPRAIVLERSFDRPNLKYEVIVKTKDPLMQLGKLVMDRFKNQCGIVYCLSKSECVEVSEFLNHNCNIKTAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTLSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCLIRNGQGYKKESLKAAVAQAQKMQQYCELKVSKLLYFWVNAGGKLCSNTLESLLTEKLANMDLTPVITASRVVRE 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2729 734 SMART ultradead3 322 524 IPR014001 -
Mibi06g2729 734 Pfam Helicase conserved C-terminal domain 541 639 IPR001650 -
Mibi06g2729 734 Pfam DEAD/DEAH box helicase 328 494 IPR011545 GO:0003676|GO:0005524
Mibi06g2729 734 PANTHER DNA HELICASE RECQ FAMILY MEMBER 306 691 - -
Mibi06g2729 734 SMART helicmild6 558 640 IPR001650 -
Mibi06g2729 734 MobiDBLite consensus disorder prediction 1 20 - -
Mibi06g2729 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 366 660 IPR027417 -
Mibi06g2729 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 334 508 IPR014001 -
Mibi06g2729 734 FunFam ATP-dependent DNA helicase 307 515 - -
Mibi06g2729 734 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 447 456 IPR002464 -
Mibi06g2729 734 CDD DEXHc_RecQ 320 515 - -
Mibi06g2729 734 Gene3D - 516 707 IPR027417 -
Mibi06g2729 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 683 IPR001650 -
Mibi06g2729 734 Gene3D - 284 515 IPR027417 -
Mibi06g2729 734 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 320 683 IPR004589 GO:0004386|GO:0006310
Mibi06g2729 734 CDD SF2_C_RecQ 516 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2729 Mibi-ChrMibi06 47145673 47153051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2729 449 638 Eukaryotic Initiation Factors Gene Family AT5G11170 25.128 3.57e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2729 06 47145673 47153051 Mibi06g2729 06 47145673 47153051 ECH