Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi06g2721 ATGGATCATCACGCGCCCCTCTCGGATGGTTCCGGATCTGACCGGTTATTCATCAAGAGCCAGATCGCCAACCACCCTCTCTATCCTCACTTACTCTCCGCCTTCTTAGACTGCCACAAGGTCGGCGCTGACCCTGATAGAATTTCCTTCCTTGAAGAAATAGGGCACCAACGCCCCCACCTCCTCCAAACTCCTCCTCCTCCTCGCTTACCCCACGACCCTCAACTAGACCACTTCATGGAATCCTACTGTGGAGTCTTGCATAGATACAAGGAGGAGCTGTCCAGGCCTTTCCACGAAGCCTCCTTCTTTCTCTCCTCTATGCAATCTAAACTCACCAGTCTTTGTGGCAACGGAACCTTCTCTATTTCATCCTCCCCTCCTCTCCCCGATGAGGCAAGTGGGAGTAAAGAGAAGGGAATGAGTAGTTGTGGAGATGCAGAAGCAGGTGGTGAAGGTGATGATGAATGTGATGGAAGCCATTTTGCAGGTGGTGAGCAAGAGCTAAGAGATATGCTGCTTCTCAAGTATAGTGGCTACCTCAGCAGTTTGAGGAAGGAGTTGATGAAGAAAAAGAAAAAGAATAAGCTTCCAAAGGAAGCCAGGATGGCTCTCCTTCAATGGTGGAACAACCACTACAGGTGGCCTTATCCTACGGAAGAAGAGAAACTGAAGCTATCAGAAGTGACTGGACTGGATCCAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAACCGTCCGAAGATATGCGTGTCTCCCTCATGGAAGGTGTGACTGGTGGTGGCATAGGTTGA 810 0.4951 MDHHAPLSDGSGSDRLFIKSQIANHPLYPHLLSAFLDCHKVGADPDRISFLEEIGHQRPHLLQTPPPPRLPHDPQLDHFMESYCGVLHRYKEELSRPFHEASFFLSSMQSKLTSLCGNGTFSISSSPPLPDEASGSKEKGMSSCGDAEAGGEGDDECDGSHFAGGEQELRDMLLLKYSGYLSSLRKELMKKKKKNKLPKEARMALLQWWNNHYRWPYPTEEEKLKLSEVTGLDPKQINNWFINQRKRHWKPSEDMRVSLMEGVTGGGIG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi06g2721 269 Pfam KNOX2 domain 72 116 IPR005541 GO:0003677|GO:0005634
Mibi06g2721 269 SUPERFAMILY Homeodomain-like 190 260 IPR009057 -
Mibi06g2721 269 ProSiteProfiles ELK domain profile. 168 188 IPR005539 GO:0003677
Mibi06g2721 269 SMART ELK_2 168 189 IPR005539 GO:0003677
Mibi06g2721 269 SMART KNOX2_2 66 117 IPR005541 GO:0003677|GO:0005634
Mibi06g2721 269 SMART KNOX1_2 16 60 IPR005540 GO:0003677|GO:0005634
Mibi06g2721 269 Pfam ELK domain 168 189 IPR005539 GO:0003677
Mibi06g2721 269 Pfam KNOX1 domain 18 57 IPR005540 GO:0003677|GO:0005634
Mibi06g2721 269 Gene3D - 186 260 - -
Mibi06g2721 269 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Mibi06g2721 269 SMART HOX_1 190 255 IPR001356 GO:0003677
Mibi06g2721 269 CDD homeodomain 200 252 IPR001356 GO:0003677
Mibi06g2721 269 ProSiteProfiles 'Homeobox' domain profile. 188 251 IPR001356 GO:0003677
Mibi06g2721 269 Pfam Homeobox KN domain 208 247 IPR008422 GO:0003677|GO:0006355
Mibi06g2721 269 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 59 256 - -
Mibi06g2721 269 MobiDBLite consensus disorder prediction 123 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi06g2721 Mibi-ChrMibi06 47103537 47107495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi06g2721 17 266 Homeobox Transcription Factor Family AT1G23380 45.850 7.19e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mibi06g2721 KNOX2 1.9e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi06g2721 06 47103537 47107495 Mibi06g2721 06 47103537 47107495 ECH